Mar-08 14:11:01.718 [main] DEBUG nextflow.cli.Launcher - Setting http proxy: [dtn04-e0, 3128]
Mar-08 14:11:01.779 [main] DEBUG nextflow.cli.Launcher - Setting https proxy: [dtn04-e0, 3128]
Mar-08 14:11:01.780 [main] DEBUG nextflow.cli.Launcher - $> /usr/local/apps/nextflow/0.30.2/bin/nextflow run /data/capaldobj/nf-core/lgcp/chipseq/ -resume --singleEnd --reads /data/capaldobj/CS02314*-ChIP-seq/Sample_2018_0*/*_R1_*.fastq.gz --macsconfig /data/capaldobj/CS02314X-ChIP-seq-results/macs.config --saturation --genome GRCh37 --outdir /data/capaldobj/CS02314X-ChIP-seq-results/pipeline-output_narrow/ -profile biowulf
Mar-08 14:11:01.869 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.30.2
Mar-08 14:11:02.561 [main] INFO nextflow.cli.CmdRun - Launching `/data/capaldobj/nf-core/lgcp/chipseq/main.nf` [sleepy_fourier] - revision: 4057dba1c8
Mar-08 14:11:02.580 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /data/capaldobj/nf-core/lgcp/chipseq/nextflow.config
Mar-08 14:11:02.581 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /data/capaldobj/nf-core/lgcp/chipseq/nextflow.config
Mar-08 14:11:02.593 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `biowulf`
Mar-08 14:11:03.063 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [standard, uppmax_devel, biowulf, test, conda, singularity, uppmax, none, aws, uppmax_modules, docker]
Mar-08 14:11:03.108 [main] DEBUG nextflow.Session - Session uuid: c951df69-ddef-4ac7-9d6d-95439fc8cb2a
Mar-08 14:11:03.109 [main] DEBUG nextflow.Session - Run name: sleepy_fourier
Mar-08 14:11:03.109 [main] DEBUG nextflow.Session - Executor pool size: 4
Mar-08 14:11:03.123 [main] DEBUG nextflow.cli.CmdRun -
Version: 0.30.2 build 4867
Modified: 16-06-2018 17:49 UTC (13:49 EDT)
System: Linux 3.10.0-862.14.4.el7.x86_64
Runtime: Groovy 2.4.15 on OpenJDK 64-Bit Server VM 1.8.0_181-b13
Encoding: UTF-8 (UTF-8)
Process: 53741@cn2342 [10.2.5.194]
CPUs: 4 - Mem: 251.6 GB (45.3 GB) - Swap: 2 GB (2 GB)
Mar-08 14:11:03.169 [main] DEBUG nextflow.Session - Work-dir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work [gpfs]
Mar-08 14:11:03.716 [main] DEBUG nextflow.Session - Session start invoked
Mar-08 14:11:03.722 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start
Mar-08 14:11:03.723 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /data/capaldobj/CS02314X-ChIP-seq-results/pipeline-output_narrow/pipeline_info/nfcore-chipseq_trace.txt
Mar-08 14:11:03.735 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing
Mar-08 14:11:04.425 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Mar-08 14:11:04.524 [main] DEBUG nextflow.Channel - files for syntax: glob; folder: /data/capaldobj/; pattern: CS02314*-ChIP-seq/Sample_2018_0*/*_R1_*.fastq.gz; options: [:]
Mar-08 14:11:04.572 [main] INFO nextflow.Nextflow - =======================================================
,--./,-.
___ __ __ __ ___ /,-._.--~'
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/chipseq : ChIP-Seq Best Practice v1.0dev
=======================================================
Mar-08 14:11:04.576 [main] INFO nextflow.Nextflow - Run Name : sleepy_fourier
Reads : /data/capaldobj/CS02314*-ChIP-seq/Sample_2018_0*/*_R1_*.fastq.gz
Data Type : Single-End
Genome : GRCh37
BWA Index : /fdb/igenomes//Homo_sapiens/Ensembl/GRCh37/Sequence/BWAIndex/
GTF File : /fdb/igenomes//Homo_sapiens/Ensembl/GRCh37/Annotation/Genes/genes.gtf
Multiple alignments : false
MACS Config : /data/capaldobj/CS02314X-ChIP-seq-results/macs.config
Saturation analysis : true
MACS broad peaks : false
Blacklist filtering : false
Extend Reads : 100 bp
Container : [:]
Current home : /home/capaldobj
Current user : capaldobj
Current path : /data/capaldobj/CS02314X-ChIP-seq-results
Working dir : /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work
Output dir : /data/capaldobj/CS02314X-ChIP-seq-results/pipeline-output_narrow/
R libraries : false
Script dir : /data/capaldobj/nf-core/lgcp/chipseq
Save Reference : true
Save Trimmed : true
Save Intermeds : true
Trim R1 : 0
Trim R2 : 0
Trim 3' R1 : 0
Trim 3' R2 : 0
Config Profile : biowulf
Mar-08 14:11:04.579 [main] INFO nextflow.Nextflow - ====================================
Mar-08 14:11:04.670 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:fastqc` matches process fastqc
Mar-08 14:11:04.674 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.674 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.685 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.688 [main] INFO nextflow.executor.Executor - [warm up] executor > slurm
Mar-08 14:11:04.696 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'slurm' > capacity: 100; pollInterval: 5s; dumpInterval: 5m
Mar-08 14:11:04.699 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor
Mar-08 14:11:04.700 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: slurm)
Mar-08 14:11:04.716 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: slurm
Mar-08 14:11:04.717 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.750 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc)
Mar-08 14:11:04.752 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc -- maxForks: 4
Mar-08 14:11:04.774 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:trim_galore` matches process trim_galore
Mar-08 14:11:04.776 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.776 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.777 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.777 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.778 [main] DEBUG nextflow.Session - >>> barrier register (process: trim_galore)
Mar-08 14:11:04.779 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > trim_galore -- maxForks: 4
Mar-08 14:11:04.801 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwa` matches process bwa
Mar-08 14:11:04.802 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.802 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.802 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.803 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.803 [main] DEBUG nextflow.Session - >>> barrier register (process: bwa)
Mar-08 14:11:04.804 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwa -- maxForks: 4
Mar-08 14:11:04.817 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:samtools` matches process samtools
Mar-08 14:11:04.818 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.819 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.819 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.819 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.820 [main] DEBUG nextflow.Session - >>> barrier register (process: samtools)
Mar-08 14:11:04.820 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > samtools -- maxForks: 4
Mar-08 14:11:04.853 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwa_mapped` matches process bwa_mapped
Mar-08 14:11:04.854 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.854 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.854 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.855 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.855 [main] DEBUG nextflow.Session - >>> barrier register (process: bwa_mapped)
Mar-08 14:11:04.856 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwa_mapped -- maxForks: 4
Mar-08 14:11:04.886 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:picard` matches process picard
Mar-08 14:11:04.887 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:04.888 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:04.888 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:04.888 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:04.889 [main] DEBUG nextflow.Session - >>> barrier register (process: picard)
Mar-08 14:11:04.889 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > picard -- maxForks: 4
Mar-08 14:11:05.002 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:countstat` matches process countstat
Mar-08 14:11:05.005 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.005 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.006 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.006 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.007 [main] DEBUG nextflow.Session - >>> barrier register (process: countstat)
Mar-08 14:11:05.012 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > countstat -- maxForks: 4
Mar-08 14:11:05.047 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.048 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.048 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.048 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.049 [main] DEBUG nextflow.Session - >>> barrier register (process: phantompeakqualtools)
Mar-08 14:11:05.050 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > phantompeakqualtools -- maxForks: 4
Mar-08 14:11:05.073 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.073 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.073 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.074 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.074 [main] DEBUG nextflow.Session - >>> barrier register (process: calculateNSCRSC)
Mar-08 14:11:05.075 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > calculateNSCRSC -- maxForks: 4
Mar-08 14:11:05.091 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.092 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.092 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.092 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.098 [main] DEBUG nextflow.Session - >>> barrier register (process: deepTools)
Mar-08 14:11:05.100 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > deepTools -- maxForks: 4
Mar-08 14:11:05.117 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:ngsplot` matches process ngsplot
Mar-08 14:11:05.118 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.118 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.118 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.119 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.120 [main] DEBUG nextflow.Session - >>> barrier register (process: ngsplot)
Mar-08 14:11:05.121 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > ngsplot -- maxForks: 4
Mar-08 14:11:05.127 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:macs` matches process macs
Mar-08 14:11:05.132 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.132 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.132 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.140 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.141 [main] DEBUG nextflow.Session - >>> barrier register (process: macs)
Mar-08 14:11:05.177 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > macs -- maxForks: 4
Mar-08 14:11:05.214 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [12/c8ab36] Cached process > fastqc (2018_051_S5_R1_001)
Mar-08 14:11:05.215 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [d5/5c942e] Cached process > fastqc (2018_054_S7_R1_001)
Mar-08 14:11:05.214 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [b3/12a14a] Cached process > trim_galore (2018_042_S9_R1_001)
Mar-08 14:11:05.215 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [af/923766] Cached process > fastqc (2018_046_S1_R1_001)
Mar-08 14:11:05.223 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:saturation` matches process saturation
Mar-08 14:11:05.224 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.224 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.224 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.224 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.225 [main] DEBUG nextflow.Session - >>> barrier register (process: saturation)
Mar-08 14:11:05.228 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [0e/b610e0] Cached process > fastqc (2018_042_S9_R1_001)
Mar-08 14:11:05.228 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [51/bec24a] Cached process > trim_galore (2018_046_S1_R1_001)
Mar-08 14:11:05.230 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [3]
Mar-08 14:11:05.235 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [fc/e0a541] Cached process > trim_galore (2018_051_S5_R1_001)
Mar-08 14:11:05.238 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [d1/69722e] Cached process > trim_galore (2018_054_S7_R1_001)
Mar-08 14:11:05.242 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > saturation -- maxForks: 4
Mar-08 14:11:05.248 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.249 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.249 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.249 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.266 [main] DEBUG nextflow.Session - >>> barrier register (process: saturation_r)
Mar-08 14:11:05.266 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > saturation_r -- maxForks: 4
Mar-08 14:11:05.280 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.285 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.285 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.286 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.286 [main] DEBUG nextflow.Session - >>> barrier register (process: chippeakanno)
Mar-08 14:11:05.286 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > chippeakanno -- maxForks: 4
Mar-08 14:11:05.342 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:multiqc` matches process multiqc
Mar-08 14:11:05.344 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.345 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.348 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.349 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.360 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [4c/c53e62] Cached process > fastqc (2018_043_S6_R1_001)
Mar-08 14:11:05.372 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [0a/b1cf83] Cached process > fastqc (2018_038_S2_R1_001)
Mar-08 14:11:05.374 [main] DEBUG nextflow.Session - >>> barrier register (process: multiqc)
Mar-08 14:11:05.375 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > multiqc -- maxForks: 4
Mar-08 14:11:05.379 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [4a/46573d] Cached process > trim_galore (2018_038_S2_R1_001)
Mar-08 14:11:05.383 [Actor Thread 17] INFO nextflow.processor.TaskProcessor - [88/0e792b] Cached process > bwa (2018_042_S9_R1_001)
Mar-08 14:11:05.387 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [3a/642c2f] Cached process > fastqc (2018_040_S4_R1_001)
Mar-08 14:11:05.398 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [ff/95d137] Cached process > trim_galore (2018_043_S6_R1_001)
Mar-08 14:11:05.402 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [2a/40d017] Cached process > fastqc (2018_037_S1_R1_001)
Mar-08 14:11:05.415 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [33/5d62b6] Cached process > bwa (2018_046_S1_R1_001)
Mar-08 14:11:05.416 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [ee/787a72] Cached process > trim_galore (2018_037_S1_R1_001)
Mar-08 14:11:05.418 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [9a/33e02b] Cached process > fastqc (2018_044_S7_R1_001)
Mar-08 14:11:05.418 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [a0/514955] Cached process > bwa (2018_051_S5_R1_001)
Mar-08 14:11:05.420 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [91/0db998] Cached process > trim_galore (2018_040_S4_R1_001)
Mar-08 14:11:05.421 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [04/cb7f11] Cached process > fastqc (2018_053_S8_R1_001)
Mar-08 14:11:05.435 [Actor Thread 8] INFO nextflow.processor.TaskProcessor - [ae/f10105] Cached process > bwa (2018_043_S6_R1_001)
Mar-08 14:11:05.443 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [6a/8e11a0] Cached process > fastqc (2018_050_S4_R1_001)
Mar-08 14:11:05.447 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [1d/1af84a] Cached process > fastqc (2018_048_S9_R1_001)
Mar-08 14:11:05.460 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [1c/b1a633] Cached process > bwa (2018_038_S2_R1_001)
Mar-08 14:11:05.461 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [be/e120a9] Cached process > samtools (2018_042_S9_R1_001)
Mar-08 14:11:05.474 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: slurm
Mar-08 14:11:05.474 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'slurm'
Mar-08 14:11:05.474 [main] DEBUG nextflow.executor.Executor - Initializing executor: slurm
Mar-08 14:11:05.474 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m
Mar-08 14:11:05.475 [main] DEBUG nextflow.Session - >>> barrier register (process: output_documentation)
Mar-08 14:11:05.475 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > output_documentation -- maxForks: 4
Mar-08 14:11:05.480 [main] DEBUG nextflow.script.ScriptRunner - > Await termination
Mar-08 14:11:05.480 [main] DEBUG nextflow.Session - Session await
Mar-08 14:11:05.481 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [df/ee293d] Cached process > bwa (2018_037_S1_R1_001)
Mar-08 14:11:05.482 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [0b/9d1dee] Cached process > fastqc (2018_052_S6_R1_001)
Mar-08 14:11:05.489 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [4b/f26469] Cached process > trim_galore (2018_053_S8_R1_001)
Mar-08 14:11:05.491 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [f0/f1c6bd] Cached process > trim_galore (2018_050_S4_R1_001)
Mar-08 14:11:05.491 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [9e/f16875] Cached process > fastqc (2018_039_S3_R1_001)
Mar-08 14:11:05.492 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [bd/cde3b5] Cached process > trim_galore (2018_048_S9_R1_001)
Mar-08 14:11:05.510 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [e6/6aab45] Cached process > trim_galore (2018_044_S7_R1_001)
Mar-08 14:11:05.522 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [56/d5cb24] Cached process > fastqc (2018_041_S5_R1_001)
Mar-08 14:11:05.526 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [6f/20aa48] Cached process > samtools (2018_038_S2_R1_001)
Mar-08 14:11:05.531 [Actor Thread 17] INFO nextflow.processor.TaskProcessor - [67/80b634] Cached process > picard (2018_042_S9_R1_001)
Mar-08 14:11:05.553 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [33/86746f] Cached process > samtools (2018_051_S5_R1_001)
Mar-08 14:11:05.558 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [40/82fac2] Cached process > fastqc (2018_045_S8_R1_001)
Mar-08 14:11:05.569 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [e5/c08feb] Cached process > bwa (2018_040_S4_R1_001)
Mar-08 14:11:05.570 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [0e/3c2a40] Cached process > trim_galore (2018_045_S8_R1_001)
Mar-08 14:11:05.570 [Actor Thread 22] INFO nextflow.processor.TaskProcessor - [55/c1e2d6] Cached process > samtools (2018_046_S1_R1_001)
Mar-08 14:11:05.581 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [8d/ea0cee] Cached process > trim_galore (2018_041_S5_R1_001)
Mar-08 14:11:05.588 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [a5/fd8431] Cached process > picard (2018_038_S2_R1_001)
Mar-08 14:11:05.592 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [65/d6f727] Cached process > trim_galore (2018_052_S6_R1_001)
Mar-08 14:11:05.593 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [81/7ef8f7] Cached process > fastqc (2018_047_S2_R1_001)
Mar-08 14:11:05.596 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [7a/11ba57] Cached process > fastqc (2018_049_S3_R1_001)
Mar-08 14:11:05.607 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [a4/132abc] Cached process > samtools (2018_037_S1_R1_001)
Mar-08 14:11:05.615 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [19/b460e1] Cached process > trim_galore (2018_039_S3_R1_001)
Mar-08 14:11:05.619 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [b2/67e9ef] Cached process > samtools (2018_043_S6_R1_001)
Mar-08 14:11:05.628 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [b4/a93c8f] Cached process > bwa (2018_050_S4_R1_001)
Mar-08 14:11:05.632 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [10/8eedcd] Cached process > picard (2018_051_S5_R1_001)
Mar-08 14:11:05.635 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [a4/4ba007] Cached process > samtools (2018_040_S4_R1_001)
Mar-08 14:11:05.635 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [60/33a484] Cached process > trim_galore (2018_049_S3_R1_001)
Mar-08 14:11:05.643 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [5b/1eeb12] Cached process > trim_galore (2018_047_S2_R1_001)
Mar-08 14:11:05.648 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [40/2b77cf] Cached process > phantompeakqualtools (2018_038_S2_R1_001)
Mar-08 14:11:05.653 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [3a/6c94d4] Cached process > bwa (2018_048_S9_R1_001)
Mar-08 14:11:05.654 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [0a/e69207] Cached process > picard (2018_046_S1_R1_001)
Mar-08 14:11:05.657 [Actor Thread 5] INFO nextflow.processor.TaskProcessor - [79/74af81] Cached process > bwa (2018_044_S7_R1_001)
Mar-08 14:11:05.661 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [81/c7fe38] Cached process > bwa (2018_053_S8_R1_001)
Mar-08 14:11:05.667 [Actor Thread 22] INFO nextflow.processor.TaskProcessor - [9d/548e43] Cached process > picard (2018_037_S1_R1_001)
Mar-08 14:11:05.677 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [50/3c6d4d] Cached process > samtools (2018_048_S9_R1_001)
Mar-08 14:11:05.679 [Actor Thread 17] INFO nextflow.processor.TaskProcessor - [84/be7a07] Cached process > picard (2018_043_S6_R1_001)
Mar-08 14:11:05.683 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [65/c934e7] Cached process > phantompeakqualtools (2018_051_S5_R1_001)
Mar-08 14:11:05.690 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [59/5ce309] Cached process > picard (2018_040_S4_R1_001)
Mar-08 14:11:05.695 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [b9/692121] Cached process > phantompeakqualtools (2018_046_S1_R1_001)
Mar-08 14:11:05.697 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [b4/624b89] Cached process > phantompeakqualtools (2018_042_S9_R1_001)
Mar-08 14:11:05.701 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [54/3d66ec] Cached process > bwa (2018_045_S8_R1_001)
Mar-08 14:11:05.701 [Actor Thread 5] INFO nextflow.processor.TaskProcessor - [64/d2c902] Cached process > samtools (2018_044_S7_R1_001)
Mar-08 14:11:05.719 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [d7/102b66] Cached process > phantompeakqualtools (2018_037_S1_R1_001)
Mar-08 14:11:05.722 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [6e/c3204e] Cached process > bwa (2018_041_S5_R1_001)
Mar-08 14:11:05.728 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [d5/4d2e40] Cached process > bwa (2018_039_S3_R1_001)
Mar-08 14:11:05.728 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [60/19588b] Cached process > picard (2018_048_S9_R1_001)
Mar-08 14:11:05.730 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [1d/24f6fb] Cached process > phantompeakqualtools (2018_043_S6_R1_001)
Mar-08 14:11:05.728 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [09/7b45ae] Cached process > samtools (2018_053_S8_R1_001)
Mar-08 14:11:05.734 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [99/5046a9] Cached process > samtools (2018_045_S8_R1_001)
Mar-08 14:11:05.736 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [a2/d0c671] Cached process > picard (2018_044_S7_R1_001)
Mar-08 14:11:05.753 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [3d/2eb31c] Cached process > bwa (2018_052_S6_R1_001)
Mar-08 14:11:05.756 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [b5/280c18] Cached process > bwa (2018_049_S3_R1_001)
Mar-08 14:11:05.765 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [6e/f6bf8d] Cached process > phantompeakqualtools (2018_044_S7_R1_001)
Mar-08 14:11:05.767 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [ce/4d90ce] Cached process > samtools (2018_039_S3_R1_001)
Mar-08 14:11:05.767 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [8c/a5ce02] Cached process > picard (2018_045_S8_R1_001)
Mar-08 14:11:05.770 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [85/dd32a2] Cached process > bwa (2018_047_S2_R1_001)
Mar-08 14:11:05.776 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [1c/c56739] Cached process > phantompeakqualtools (2018_040_S4_R1_001)
Mar-08 14:11:05.777 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [fe/34d517] Cached process > samtools (2018_041_S5_R1_001)
Mar-08 14:11:05.781 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [f3/0fadf0] Cached process > picard (2018_053_S8_R1_001)
Mar-08 14:11:05.790 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [a7/f909b1] Cached process > phantompeakqualtools (2018_045_S8_R1_001)
Mar-08 14:11:05.790 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [3b/a44893] Cached process > picard (2018_039_S3_R1_001)
Mar-08 14:11:05.794 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [76/86fbc4] Cached process > samtools (2018_052_S6_R1_001)
Mar-08 14:11:05.795 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [f9/dc70b7] Cached process > phantompeakqualtools (2018_048_S9_R1_001)
Mar-08 14:11:05.808 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [ea/2c4d6f] Cached process > samtools (2018_047_S2_R1_001)
Mar-08 14:11:05.812 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [4c/343610] Cached process > picard (2018_041_S5_R1_001)
Mar-08 14:11:05.813 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [1f/f1646f] Cached process > samtools (2018_049_S3_R1_001)
Mar-08 14:11:05.852 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [f3/9ab700] Cached process > phantompeakqualtools (2018_039_S3_R1_001)
Mar-08 14:11:05.860 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [ab/02c221] Cached process > phantompeakqualtools (2018_041_S5_R1_001)
Mar-08 14:11:05.860 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [79/bae88a] Cached process > picard (2018_047_S2_R1_001)
Mar-08 14:11:05.862 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [ed/677b81] Cached process > picard (2018_049_S3_R1_001)
Mar-08 14:11:05.878 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [f5/d639d0] Cached process > phantompeakqualtools (2018_049_S3_R1_001)
Mar-08 14:11:05.880 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [34/2f35b1] Cached process > phantompeakqualtools (2018_047_S2_R1_001)
Mar-08 14:11:06.146 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [93/93d61f] Cached process > trim_galore (2018_034_S7_R1_001)
Mar-08 14:11:06.153 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [8d/d124dc] Cached process > trim_galore (2018_033_S6_R1_001)
Mar-08 14:11:06.161 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [22/2fcd56] Cached process > trim_galore (2018_031_S4_R1_001)
Mar-08 14:11:06.163 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [05/5adc94] Cached process > fastqc (2018_031_S4_R1_001)
Mar-08 14:11:06.165 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [71/7e5f1a] Cached process > fastqc (2018_033_S6_R1_001)
Mar-08 14:11:06.169 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [3f/70e8e8] Cached process > fastqc (2018_034_S7_R1_001)
Mar-08 14:11:06.171 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [e5/8b71bb] Cached process > fastqc (2018_030_S3_R1_001)
Mar-08 14:11:06.176 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [4e/f01531] Cached process > trim_galore (2018_030_S3_R1_001)
Mar-08 14:11:06.177 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [f7/4e0d59] Cached process > trim_galore (2018_028_S1_R1_001)
Mar-08 14:11:06.191 [Actor Thread 28] INFO nextflow.processor.TaskProcessor - [8a/e6df81] Cached process > trim_galore (2018_035_S8_R1_001)
Mar-08 14:11:06.193 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [2e/dd0d55] Cached process > trim_galore (2018_029_S2_R1_001)
Mar-08 14:11:06.195 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [aa/d80ea3] Cached process > bwa (2018_034_S7_R1_001)
Mar-08 14:11:06.202 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [e7/a66c8b] Cached process > fastqc (2018_028_S1_R1_001)
Mar-08 14:11:06.208 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [ec/c52c66] Cached process > fastqc (2018_029_S2_R1_001)
Mar-08 14:11:06.215 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [2b/3696f9] Cached process > fastqc (2018_032_S5_R1_001)
Mar-08 14:11:06.215 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [32/f5f5db] Cached process > bwa (2018_033_S6_R1_001)
Mar-08 14:11:06.219 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [96/286c3e] Cached process > fastqc (2018_035_S8_R1_001)
Mar-08 14:11:06.222 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [3b/526d46] Cached process > trim_galore (2018_032_S5_R1_001)
Mar-08 14:11:06.226 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [91/63659c] Cached process > bwa (2018_031_S4_R1_001)
Mar-08 14:11:06.231 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [f7/a19598] Cached process > samtools (2018_034_S7_R1_001)
Mar-08 14:11:06.232 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [21/da6718] Cached process > trim_galore (2018_036_S9_R1_001)
Mar-08 14:11:06.236 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [74/d4b269] Cached process > fastqc (2018_036_S9_R1_001)
Mar-08 14:11:06.240 [Actor Thread 13] INFO nextflow.processor.TaskProcessor - [ce/042e4a] Cached process > samtools (2018_033_S6_R1_001)
Mar-08 14:11:06.242 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [8f/9834d3] Cached process > bwa (2018_030_S3_R1_001)
Mar-08 14:11:06.244 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [c7/c8f43d] Cached process > bwa (2018_028_S1_R1_001)
Mar-08 14:11:06.248 [Actor Thread 9] INFO nextflow.processor.TaskProcessor - [21/12228d] Cached process > bwa (2018_029_S2_R1_001)
Mar-08 14:11:06.254 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [d1/43a3a0] Cached process > samtools (2018_031_S4_R1_001)
Mar-08 14:11:06.256 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [9f/2a10f4] Cached process > bwa (2018_035_S8_R1_001)
Mar-08 14:11:06.260 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [ab/da68d1] Cached process > samtools (2018_030_S3_R1_001)
Mar-08 14:11:06.263 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [b5/9033be] Cached process > samtools (2018_028_S1_R1_001)
Mar-08 14:11:06.322 [Actor Thread 24] INFO nextflow.processor.TaskProcessor - [59/b9e63c] Cached process > samtools (2018_029_S2_R1_001)
Mar-08 14:11:06.324 [Actor Thread 22] INFO nextflow.processor.TaskProcessor - [80/a61968] Cached process > fastqc (2018_022_S4_R1_001)
Mar-08 14:11:06.325 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [dc/085579] Cached process > bwa (2018_036_S9_R1_001)
Mar-08 14:11:06.329 [Actor Thread 2] INFO nextflow.processor.TaskProcessor - [bd/158d1a] Cached process > samtools (2018_035_S8_R1_001)
Mar-08 14:11:06.331 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [5e/7ff364] Cached process > trim_galore (2018_022_S4_R1_001)
Mar-08 14:11:06.335 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [16/544020] Cached process > fastqc (2018_027_S9_R1_001)
Mar-08 14:11:06.340 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [1c/74c488] Cached process > fastqc (2018_020_S2_R1_001)
Mar-08 14:11:06.352 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [7c/626231] Cached process > fastqc (2018_021_S3_R1_001)
Mar-08 14:11:06.353 [Actor Thread 27] INFO nextflow.processor.TaskProcessor - [03/dbe697] Cached process > trim_galore (2018_027_S9_R1_001)
Mar-08 14:11:06.353 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [c6/72faa0] Cached process > fastqc (2018_026_S8_R1_001)
Mar-08 14:11:06.361 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [79/4347a6] Cached process > bwa (2018_032_S5_R1_001)
Mar-08 14:11:06.364 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [57/74eff6] Cached process > trim_galore (2018_021_S3_R1_001)
Mar-08 14:11:06.374 [Actor Thread 22] INFO nextflow.processor.TaskProcessor - [e5/9cb703] Cached process > fastqc (2018_024_S6_R1_001)
Mar-08 14:11:06.379 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [39/996e21] Cached process > trim_galore (2018_020_S2_R1_001)
Mar-08 14:11:06.381 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [c4/91eb66] Cached process > samtools (2018_036_S9_R1_001)
Mar-08 14:11:06.387 [Actor Thread 18] INFO nextflow.processor.TaskProcessor - [68/0b9049] Cached process > fastqc (2018_019_S1_R1_001)
Mar-08 14:11:06.392 [Actor Thread 4] INFO nextflow.processor.TaskProcessor - [f9/93c44e] Cached process > fastqc (2018_025_S7_R1_001)
Mar-08 14:11:06.393 [Actor Thread 29] INFO nextflow.processor.TaskProcessor - [29/c5cf62] Cached process > trim_galore (2018_026_S8_R1_001)
Mar-08 14:11:06.395 [Actor Thread 21] INFO nextflow.processor.TaskProcessor - [c7/8c5c0d] Cached process > trim_galore (2018_019_S1_R1_001)
Mar-08 14:11:06.397 [Actor Thread 7] INFO nextflow.processor.TaskProcessor - [74/eba99f] Cached process > trim_galore (2018_024_S6_R1_001)
Mar-08 14:11:06.402 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [19/ebd65c] Cached process > fastqc (2018_023_S5_R1_001)
Mar-08 14:11:06.404 [Actor Thread 19] INFO nextflow.processor.TaskProcessor - [eb/4a477f] Cached process > samtools (2018_032_S5_R1_001)
Mar-08 14:11:06.410 [Actor Thread 12] INFO nextflow.processor.TaskProcessor - [8d/f7d4b8] Cached process > trim_galore (2018_025_S7_R1_001)
Mar-08 14:11:06.457 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [17/ff2689] Cached process > trim_galore (2018_023_S5_R1_001)
Mar-08 14:11:06.766 [Actor Thread 25] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc)
Mar-08 14:11:06.767 [Actor Thread 26] DEBUG nextflow.Session - <<< barrier arrive (process: trim_galore)
Mar-08 14:11:06.904 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_054_S7_R1_001) > jobId: 22044598; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/15/0cc411078dcf0cf0c0985a84d6f9bb
Mar-08 14:11:06.909 [Task submitter] INFO nextflow.Session - [15/0cc411] Submitted process > bwa (2018_054_S7_R1_001)
Mar-08 14:11:06.955 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [ef/360f85] Cached process > picard (2018_029_S2_R1_001)
Mar-08 14:11:06.958 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [53/86b261] Cached process > picard (2018_030_S3_R1_001)
Mar-08 14:11:06.961 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [b9/ec4f54] Cached process > picard (2018_028_S1_R1_001)
Mar-08 14:11:06.972 [Actor Thread 6] INFO nextflow.processor.TaskProcessor - [b7/c443e6] Cached process > picard (2018_035_S8_R1_001)
Mar-08 14:11:06.990 [Actor Thread 11] INFO nextflow.processor.TaskProcessor - [f0/c85660] Cached process > phantompeakqualtools (2018_028_S1_R1_001)
Mar-08 14:11:06.992 [Actor Thread 10] INFO nextflow.processor.TaskProcessor - [5f/524c7d] Cached process > phantompeakqualtools (2018_035_S8_R1_001)
Mar-08 14:11:07.003 [Actor Thread 5] INFO nextflow.processor.TaskProcessor - [bb/94113a] Cached process > phantompeakqualtools (2018_030_S3_R1_001)
Mar-08 14:11:07.006 [Actor Thread 14] INFO nextflow.processor.TaskProcessor - [8b/9625c6] Cached process > phantompeakqualtools (2018_029_S2_R1_001)
Mar-08 14:11:07.006 [Actor Thread 23] INFO nextflow.processor.TaskProcessor - [9c/b8c6e4] Cached process > picard (2018_032_S5_R1_001)
Mar-08 14:11:07.007 [Actor Thread 20] INFO nextflow.processor.TaskProcessor - [6e/58617c] Cached process > picard (2018_036_S9_R1_001)
Mar-08 14:11:07.027 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [c0/df5def] Cached process > phantompeakqualtools (2018_036_S9_R1_001)
Mar-08 14:11:08.229 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process samtools (2018_050_S4_R1_001) > jobId: 22044599; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/22/fa7955bdc319ba4bf1307394d87f73
Mar-08 14:11:08.230 [Task submitter] INFO nextflow.Session - [22/fa7955] Submitted process > samtools (2018_050_S4_R1_001)
Mar-08 14:11:09.469 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process phantompeakqualtools (2018_053_S8_R1_001) > jobId: 22044600; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/07/a38985812ecf31371b3838f030935a
Mar-08 14:11:09.470 [Task submitter] INFO nextflow.Session - [07/a38985] Submitted process > phantompeakqualtools (2018_053_S8_R1_001)
Mar-08 14:11:10.713 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process picard (2018_052_S6_R1_001) > jobId: 22044601; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/ac/cdaaaa677d11be595ceac321c644c4
Mar-08 14:11:10.714 [Task submitter] INFO nextflow.Session - [ac/cdaaaa] Submitted process > picard (2018_052_S6_R1_001)
Mar-08 14:11:11.943 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process picard (2018_033_S6_R1_001) > jobId: 22044602; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/18/554371fd61317370002512c27ab9d8
Mar-08 14:11:11.946 [Task submitter] INFO nextflow.Session - [18/554371] Submitted process > picard (2018_033_S6_R1_001)
Mar-08 14:11:13.195 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process picard (2018_034_S7_R1_001) > jobId: 22044603; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/57/a3c509e0f1899c19ad92cd990f83c7
Mar-08 14:11:13.195 [Task submitter] INFO nextflow.Session - [57/a3c509] Submitted process > picard (2018_034_S7_R1_001)
Mar-08 14:11:14.448 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process picard (2018_031_S4_R1_001) > jobId: 22044604; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8f/50424587022232cf922a36aa7cec34
Mar-08 14:11:14.449 [Task submitter] INFO nextflow.Session - [8f/504245] Submitted process > picard (2018_031_S4_R1_001)
Mar-08 14:11:15.654 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_022_S4_R1_001) > jobId: 22044605; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/c8/d1403871bcb328664fec9141220ece
Mar-08 14:11:15.655 [Task submitter] INFO nextflow.Session - [c8/d14038] Submitted process > bwa (2018_022_S4_R1_001)
Mar-08 14:11:16.872 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_020_S2_R1_001) > jobId: 22044606; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/bc/e7435f1150891e42342a97ebd4a305
Mar-08 14:11:16.872 [Task submitter] INFO nextflow.Session - [bc/e7435f] Submitted process > bwa (2018_020_S2_R1_001)
Mar-08 14:11:18.076 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_027_S9_R1_001) > jobId: 22044608; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/b1/167309bdfd8f454b77c6d397af2bc4
Mar-08 14:11:18.077 [Task submitter] INFO nextflow.Session - [b1/167309] Submitted process > bwa (2018_027_S9_R1_001)
Mar-08 14:11:19.289 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_021_S3_R1_001) > jobId: 22044609; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/92/435e2b898816628e4344e1815b5a3b
Mar-08 14:11:19.289 [Task submitter] INFO nextflow.Session - [92/435e2b] Submitted process > bwa (2018_021_S3_R1_001)
Mar-08 14:11:20.996 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_024_S6_R1_001) > jobId: 22044610; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/e1/7d25e61ab6f7ce4fa1f8a3239672fd
Mar-08 14:11:20.997 [Task submitter] INFO nextflow.Session - [e1/7d25e6] Submitted process > bwa (2018_024_S6_R1_001)
Mar-08 14:11:23.479 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_025_S7_R1_001) > jobId: 22044612; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/89/ad8c77210e80d43e718ddb5e68c1d8
Mar-08 14:11:23.480 [Task submitter] INFO nextflow.Session - [89/ad8c77] Submitted process > bwa (2018_025_S7_R1_001)
Mar-08 14:11:24.658 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_019_S1_R1_001) > jobId: 22044614; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/a9/3ffffaed3cff37f05e55559db768b3
Mar-08 14:11:24.659 [Task submitter] INFO nextflow.Session - [a9/3ffffa] Submitted process > bwa (2018_019_S1_R1_001)
Mar-08 14:11:25.862 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_026_S8_R1_001) > jobId: 22044616; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/02/a1f68fbfa349f56abd82cd75815d98
Mar-08 14:11:25.863 [Task submitter] INFO nextflow.Session - [02/a1f68f] Submitted process > bwa (2018_026_S8_R1_001)
Mar-08 14:11:27.079 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process phantompeakqualtools (2018_032_S5_R1_001) > jobId: 22044617; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8b/0a8e26a3582b7c4c23e60c267070da
Mar-08 14:11:27.080 [Task submitter] INFO nextflow.Session - [8b/0a8e26] Submitted process > phantompeakqualtools (2018_032_S5_R1_001)
Mar-08 14:11:28.349 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process bwa (2018_023_S5_R1_001) > jobId: 22044618; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/15/1d51d500b4f6c3d1bd279b7f61b9d7
Mar-08 14:11:28.350 [Task submitter] INFO nextflow.Session - [15/1d51d5] Submitted process > bwa (2018_023_S5_R1_001)
Mar-08 14:16:09.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 17 -- pending tasks are shown below
~> TaskHandler[jobId: 22044598; id: 9; name: bwa (2018_054_S7_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/15/0cc411078dcf0cf0c0985a84d6f9bb started: 1552072384737; exited: -; ]
~> TaskHandler[jobId: 22044599; id: 66; name: samtools (2018_050_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/22/fa7955bdc319ba4bf1307394d87f73 started: 1552072386707; exited: -; ]
~> TaskHandler[jobId: 22044600; id: 95; name: phantompeakqualtools (2018_053_S8_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/07/a38985812ecf31371b3838f030935a started: 1552072386715; exited: -; ]
~> TaskHandler[jobId: 22044601; id: 97; name: picard (2018_052_S6_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/ac/cdaaaa677d11be595ceac321c644c4 started: 1552072386734; exited: -; ]
~> TaskHandler[jobId: 22044602; id: 132; name: picard (2018_033_S6_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/18/554371fd61317370002512c27ab9d8 started: 1552072386739; exited: -; ]
~> TaskHandler[jobId: 22044603; id: 131; name: picard (2018_034_S7_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/57/a3c509e0f1899c19ad92cd990f83c7 started: 1552072386746; exited: -; ]
~> TaskHandler[jobId: 22044604; id: 137; name: picard (2018_031_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8f/50424587022232cf922a36aa7cec34 started: 1552072386752; exited: -; ]
~> TaskHandler[jobId: 22044605; id: 150; name: bwa (2018_022_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/c8/d1403871bcb328664fec9141220ece started: 1552072386758; exited: -; ]
~> TaskHandler[jobId: 22044606; id: 161; name: bwa (2018_020_S2_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/bc/e7435f1150891e42342a97ebd4a305 started: 1552072386763; exited: -; ]
~> TaskHandler[jobId: 22044608; id: 157; name: bwa (2018_027_S9_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/b1/167309bdfd8f454b77c6d397af2bc4 started: 1552072386771; exited: -; ]
.. remaining tasks omitted.
Mar-08 14:21:09.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 17 -- pending tasks are shown below
~> TaskHandler[jobId: 22044598; id: 9; name: bwa (2018_054_S7_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/15/0cc411078dcf0cf0c0985a84d6f9bb started: 1552072384737; exited: -; ]
~> TaskHandler[jobId: 22044599; id: 66; name: samtools (2018_050_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/22/fa7955bdc319ba4bf1307394d87f73 started: 1552072386707; exited: -; ]
~> TaskHandler[jobId: 22044600; id: 95; name: phantompeakqualtools (2018_053_S8_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/07/a38985812ecf31371b3838f030935a started: 1552072386715; exited: -; ]
~> TaskHandler[jobId: 22044601; id: 97; name: picard (2018_052_S6_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/ac/cdaaaa677d11be595ceac321c644c4 started: 1552072386734; exited: -; ]
~> TaskHandler[jobId: 22044602; id: 132; name: picard (2018_033_S6_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/18/554371fd61317370002512c27ab9d8 started: 1552072386739; exited: -; ]
~> TaskHandler[jobId: 22044603; id: 131; name: picard (2018_034_S7_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/57/a3c509e0f1899c19ad92cd990f83c7 started: 1552072386746; exited: -; ]
~> TaskHandler[jobId: 22044604; id: 137; name: picard (2018_031_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8f/50424587022232cf922a36aa7cec34 started: 1552072386752; exited: -; ]
~> TaskHandler[jobId: 22044605; id: 150; name: bwa (2018_022_S4_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/c8/d1403871bcb328664fec9141220ece started: 1552072386758; exited: -; ]
~> TaskHandler[jobId: 22044606; id: 161; name: bwa (2018_020_S2_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/bc/e7435f1150891e42342a97ebd4a305 started: 1552072386763; exited: -; ]
~> TaskHandler[jobId: 22044608; id: 157; name: bwa (2018_027_S9_R1_001); status: RUNNING; exit: -; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/b1/167309bdfd8f454b77c6d397af2bc4 started: 1552072386771; exited: -; ]
.. remaining tasks omitted.
Mar-08 14:24:15.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 22044617; id: 178; name: phantompeakqualtools (2018_032_S5_R1_001); status: COMPLETED; exit: 137; error: -; workDir: /gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8b/0a8e26a3582b7c4c23e60c267070da started: 1552072386811; exited: 2019-03-08T19:24:11.087069Z; ]
Mar-08 14:24:15.716 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'phantompeakqualtools (2018_032_S5_R1_001)'
Caused by:
Process `phantompeakqualtools (2018_032_S5_R1_001)` terminated with an error exit status (137)
Command executed:
run_spp.r -c="2018_032_S5_R1_001.dedup.sorted.bam" -savp -out="2018_032_S5_R1_001.spp.out"
Command exit status:
137
Command output:
################
ChIP data: 2018_032_S5_R1_001.dedup.sorted.bam
Control data: NA
strandshift(min): -500
strandshift(step): 5
strandshift(max) 1500
user-defined peak shift NA
exclusion(min): 10
exclusion(max): NaN
num parallel nodes: NA
FDR threshold: 0.01
NumPeaks Threshold: NA
Output Directory: .
narrowPeak output file name: NA
regionPeak output file name: NA
Rdata filename: NA
plot pdf filename: ./2018_032_S5_R1_001.dedup.sorted.pdf
result filename: 2018_032_S5_R1_001.spp.out
Overwrite files?: FALSE
[1] TRUE
Reading ChIP tagAlign/BAM file 2018_032_S5_R1_001.dedup.sorted.bam
opened /tmp/Rtmp2eTnWZ/2018_032_S5_R1_001.dedup.sorted.tagAlign1a0037df6a45
done. read 37330015 fragments
ChIP data read length 76
[1] TRUE
Calculating peak characteristics
Command error:
Loading required package: Rcpp
.command.sh: line 2: 6656 Killed run_spp.r -c="2018_032_S5_R1_001.dedup.sorted.bam" -savp -out="2018_032_S5_R1_001.spp.out"
Work dir:
/gpfs/gsfs11/users/capaldobj/CS02314X-ChIP-seq-results/work/8b/0a8e26a3582b7c4c23e60c267070da
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
Mar-08 14:24:15.751 [Task monitor] DEBUG nextflow.Session - Session aborted -- Cause: Process `phantompeakqualtools (2018_032_S5_R1_001)` terminated with an error exit status (137)
Mar-08 14:24:15.825 [Task monitor] DEBUG nextflow.Session - The following nodes are still active:
[process] samtools
status=ACTIVE
port 0: (queue) OPEN; channel: bam
port 1: (cntrl) OPEN; channel: $
[process] bwa_mapped
status=ACTIVE
port 0: (value) - ; channel: input_files
port 1: (value) - ; channel: bai
port 2: (cntrl) OPEN; channel: $
[process] picard
status=ACTIVE
port 0: (queue) OPEN; channel: bam
port 1: (cntrl) OPEN; channel: $
[process] countstat
status=ACTIVE
port 0: (value) - ; channel: input
port 1: (cntrl) OPEN; channel: $
[process] phantompeakqualtools
status=ACTIVE
port 0: (queue) OPEN; channel: bam
port 1: (cntrl) OPEN; channel: $
[process] calculateNSCRSC
status=ACTIVE
port 0: (value) - ; channel: spp_out_list
port 1: (cntrl) OPEN; channel: $
[process] deepTools
status=ACTIVE
port 0: (value) - ; channel: bam
port 1: (value) - ; channel: bai
port 2: (cntrl) OPEN; channel: $
[process] ngsplot
status=ACTIVE
port 0: (value) - ; channel: input_bam_files
port 1: (value) - ; channel: input_bai_files
port 2: (cntrl) OPEN; channel: $
[process] macs
status=ACTIVE
port 0: (value) - ; channel: bam_for_macs
port 1: (value) - ; channel: bai_for_macs
port 2: (queue) OPEN; channel: -
port 3: (cntrl) OPEN; channel: $
[process] saturation
status=ACTIVE
port 0: (value) - ; channel: bam_for_saturation
port 1: (value) - ; channel: bai_for_saturation
port 2: (queue) OPEN; channel: -
port 3: (value) - ; channel: __$eachinparam<3>
port 4: (cntrl) OPEN; channel: $
[process] saturation_r
status=ACTIVE
port 0: (value) - ; channel: macsconfig
port 1: (value) - ; channel: countstat
port 2: (value) - ; channel: saturation_results_collection
port 3: (cntrl) OPEN; channel: $
[process] chippeakanno
status=ACTIVE
port 0: (value) - ; channel: macs_peaks_collection
port 1: (value) - ; channel: gtf
port 2: (cntrl) OPEN; channel: $
[process] multiqc
status=ACTIVE
port 0: (value) - ; channel: multiqc_config
port 1: (value) - ; channel: fastqc
port 2: (value) - ; channel: trimgalore/*
port 3: (value) - ; channel: samtools/*
port 4: (value) - ; channel: picard/*
port 5: (cntrl) OPEN; channel: $
[process] output_documentation
status=ACTIVE
port 0: (value) - ; channel: prefix
port 1: (value) - ; channel: output
port 2: (cntrl) OPEN; channel: $
Mar-08 14:24:15.832 [main] DEBUG nextflow.Session - Session await > all process finished
Mar-08 14:24:15.833 [main] DEBUG nextflow.Session - Session await > all barriers passed
Mar-08 14:24:16.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: slurm)
Mar-08 14:24:16.255 [main] INFO nextflow.Nextflow - [nf-core/chipseq] Pipeline Complete
Mar-08 14:24:16.269 [main] WARN n.processor.TaskPollingMonitor - Killing pending tasks (16)
Mar-08 14:24:16.381 [main] DEBUG nextflow.trace.StatsObserver - Workflow completed > WorkflowStats[succeedCount=0; failedCount=17; ignoredCount=0; cachedCount=163; succeedDuration=0ms; failedDuration=11m 2s; cachedDuration=5d 15h 26m 38s]
Mar-08 14:24:16.381 [main] DEBUG nextflow.trace.TraceFileObserver - Flow completing -- flushing trace file
Mar-08 14:24:16.398 [main] DEBUG nextflow.trace.ReportObserver - Flow completing -- rendering html report
Mar-08 14:24:16.590 [main] DEBUG nextflow.trace.ReportObserver - Execution report summary data:
{"phantompeakqualtools":{"cpu":{"mean":4338.2,"min":1090.5,"q1":2266.67,"q2":3313,"q3":6796.1,"max":9121,"minLabel":"phantompeakqualtools (2018_039_S3_R1_001)","maxLabel":"phantompeakqualtools (2018_032_S5_R1_001)","q1Label":"phantompeakqualtools (2018_043_S6_R1_001)","q2Label":"phantompeakqualtools (2018_040_S4_R1_001)","q3Label":"phantompeakqualtools (2018_029_S2_R1_001)"},"mem":{"mean":1573037260.8,"min":749498368,"q1":1069484032,"q2":1346160640,"q3":2398029824,"max":2488328192,"minLabel":"phantompeakqualtools (2018_039_S3_R1_001)","maxLabel":"phantompeakqualtools (2018_028_S1_R1_001)","q1Label":"phantompeakqualtools (2018_037_S1_R1_001)","q2Label":"phantompeakqualtools (2018_040_S4_R1_001)","q3Label":"phantompeakqualtools (2018_036_S9_R1_001)"},"time":{"mean":1069263.25,"min":265963,"q1":580832,"q2":715079,"q3":1453738.25,"max":2680287,"minLabel":"phantompeakqualtools (2018_039_S3_R1_001)","maxLabel":"phantompeakqualtools (2018_036_S9_R1_001)","q1Label":"phantompeakqualtools (2018_043_S6_R1_001)","q2Label":"phantompeakqualtools (2018_040_S4_R1_001)","q3Label":"phantompeakqualtools (2018_047_S2_R1_001)"},"reads":{"mean":774731776,"min":0,"q1":0,"q2":1986560,"q3":1534476288,"max":3274293248,"minLabel":"phantompeakqualtools (2018_038_S2_R1_001)","maxLabel":"phantompeakqualtools (2018_032_S5_R1_001)","q1Label":"phantompeakqualtools (2018_048_S9_R1_001)","q2Label":"phantompeakqualtools (2018_037_S1_R1_001)","q3Label":"phantompeakqualtools (2018_028_S1_R1_001)"},"writes":{"mean":1718302720,"min":439996416,"q1":833373184,"q2":1312448512,"q3":2894243840,"max":3299008512,"minLabel":"phantompeakqualtools (2018_039_S3_R1_001)","maxLabel":"phantompeakqualtools (2018_030_S3_R1_001)","q1Label":"phantompeakqualtools (2018_037_S1_R1_001)","q2Label":"phantompeakqualtools (2018_040_S4_R1_001)","q3Label":"phantompeakqualtools (2018_029_S2_R1_001)"},"cpuUsage":{"mean":4338.2,"min":1090.5,"q1":2266.67,"q2":3313,"q3":6796.1,"max":9121,"minLabel":"phantompeakqualtools (2018_039_S3_R1_001)","maxLabel":"phantompeakqualtools (2018_032_S5_R1_001)","q1Label":"phantompeakqualtools (2018_043_S6_R1_001)","q2Label":"phantompeakqualtools (2018_040_S4_R1_001)","q3Label":"phantompeakqualtools (2018_029_S2_R1_001)"},"memUsage":null,"timeUsage":null},"fastqc":{"cpu":{"mean":166.56,"min":129.7,"q1":147.38,"q2":155.7,"q3":173.13,"max":313.9,"minLabel":"fastqc (2018_051_S5_R1_001)","maxLabel":"fastqc (2018_046_S1_R1_001)","q1Label":"fastqc (2018_034_S7_R1_001)","q2Label":"fastqc (2018_024_S6_R1_001)","q3Label":"fastqc (2018_042_S9_R1_001)"},"mem":{"mean":2796563228.44,"min":2720681984,"q1":2798485504,"q2":2798485504,"q3":2802704384,"max":2802704384,"minLabel":"fastqc (2018_044_S7_R1_001)","maxLabel":"fastqc (2018_025_S7_R1_001)","q1Label":"fastqc (2018_038_S2_R1_001)","q2Label":"fastqc (2018_036_S9_R1_001)","q3Label":"fastqc (2018_046_S1_R1_001)"},"time":{"mean":528830.06,"min":131561,"q1":346906,"q2":465431.5,"q3":677793.25,"max":1260941,"minLabel":"fastqc 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Mar-08 14:24:17.433 [main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline
Mar-08 14:24:17.564 [main] DEBUG nextflow.CacheDB - Closing CacheDB done
Mar-08 14:24:17.615 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye