jfallmann Goto Github PK
Name: Joerg Fallmann
Type: User
Company: @IMPIMBA @ObenaufLab @Bierinformatik
Bio: Bioinformatics Scientist
Location: Vienna/Leipzig
Name: Joerg Fallmann
Type: User
Company: @IMPIMBA @ObenaufLab @Bierinformatik
Bio: Bioinformatics Scientist
Location: Vienna/Leipzig
Algorithm & Data structures
This is a list of Free Software network services and web applications which can be hosted locally. Selfhosting is the process of locally hosting and managing applications instead of renting from SaaS providers.
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Code for workflows for differential splicing and isoform expression comparison paper (Merino et al)
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
Official git repository for Biopython (converted from CVS)
Galaxy admin trainings for aspiring Skywalkers
A SingleCell RNASeq pre-processing pipeline built on snakemake
For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
Examples of Galaxy data_source servers
Galaxy RNA workbench (de.NBI project)
Collection of Galaxy-tours
RNA workbench presentation, Galaxy Community Conference 2017
Small scripts manly for NGS data analysis
HRIBO (High-throughput annotation by Ribo-seq)
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
Repository for config files of published results
Data and analysis for NA12878 genome on nanopore
Repository to host tool-specific module files for the Nextflow DSL2 community!
SOP collection for NGS-QC
A delightful community-driven (with 1,100+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish
Piwik API for Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.