rodtheo's Projects
A generic repo where
BWT Text Indexing Library: a set of tools to work with BWT-based text indexes
Course materials for my course "Genomic with R" that ran in 2018. The material focused mainly on data manipulation and visualization.
Course materials for my course "Genomic with R" that ran in 2019. The material focused mainly on data manipulation and visualization.
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
MVP of the HtsGet spec https://samtools.github.io/hts-specs/htsget.html
Collection of scripts related to TAOCP Knuths book Volume 4A
Miniprot Rust Bindings
Repository to host tool-specific module files for the Nextflow DSL2 community!
Nf-core pipeline to polish long-read assemblies originated from pacbio clr reads (mainly from pacbio sequel platforms)
A comprehensive assembly evaluating pipeline
Generic Template for Fastai NLP Model in Render
Repositório com os arquivos e documentos referentes ao projeto Detecção de conteúdo depressivo em tweets.
Implementations of range Maximum query algorithms in C++.
A rust command line toolkit for making a genome assembly ready to submit
Solutions for the LBB-Mendelics Bioinformatic 2021 Challenge
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Collection of C++ codes including exercise solutions of Sedwick book part 5