hobrien Goto Github PK

agaricalesgenomics

Scripts and data used for the analyses presented in Tales from the crypt: "Genome mining from fungarium specimens to identify low copy loci for phylogenomics of the Agaricales"

bee_space

Scripts to plot spec data in bee colour space

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing sequencing data

curriculumvitae

Heath O'Brien CV

diezmannlab

R code and data sets generated as part of the lab's work on Hsp90's role in fungal virulence and biology

diezmannlabmanduca

Tobacco Hornworm as a novel host model for the study of fungal virulence and drug efficacy

dsg_bioinformatics

Bioinformatics Tools for the Guttman Lab Comparative Genomics Group

ea-utils

Automatically exported from code.google.com/p/ea-utils

flex

A framework (comand line tool + libraries) for creating flexible compute pipelines

genex-fb1

genex-fb2

genex-fb3

growthgrids

A simple Shiny app to plot growth curve data from plate readers

hobrien

Config files for my GitHub profile.

hobrien.github.io

labnotes

longcovidtools

Tools to prepare or QC genetic data for cohorts in the Long Covid HGI

microglia-

nextflow-tutorial

Nextflow training material for introductory tutorial

peltigera_its

perl

photobiontdiversity

Data and scripts for PhotobiontDiversity.wordpress.com

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python

r

R_ scripts

rnaseqtools

Descriptions and Benchmarks for RNAseq tools

rnotes_blogdown

jen richmond blog

sartools

Statistical Analysis of RNA-Seq Tools

selaginella_dge

Differential Gene Expression Analyses on Selaginella

shoppinglist