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heylf's Projects

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bctools icon bctools

Set of tools for handling barcodes in NGS data.

cellranger icon cellranger

Nextflow pipeline wrapper for executing Cell Ranger

cnbm icon cnbm

Classification and network base methods (for clinical data regarding cancer)

galaxy icon galaxy

Data intensive science for everyone.

gcc2019 icon gcc2019

Lets collect logos and documents for the GCC2019 here ...

gruffi icon gruffi

Granular Functional Filtering (Gruffi) to isolate stressed cells

mcmicro icon mcmicro

Multiple-choice microscopy pipeline

mcmicro_qc icon mcmicro_qc

Module to prepare QC output from MCMICRO for MultiQC.

merge_pcr_duplicates icon merge_pcr_duplicates

Tool for iCLIP data analysis. Merges PCR duplicates according to random barcodes that were extracted earlier.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

scrnaseq icon scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

seurat.utils icon seurat.utils

Various utility functions for Seurat single-cell analysis

targetdist icon targetdist

Plot distribution over hierarchical sets of genomic targets.

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