shenyang1981 Goto Github PK

ansible-for-devops

Ansible for DevOps examples.

ansible-real-life

Ansible Real Life Scenarios and PoC Practices

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

aucell

AUCell: score single cells with gene regulatory networks

awesome-books

:books: 开发者推荐阅读的书籍

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

aws.s3

Amazon Simple Storage Service (S3) API Client

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bio-ansible

Proof of concept to use ansible + Lmod to deploy a bioinformatics server

cellar

scRNA-Seq pipelines and analysis vignettes

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

dl-visuals

Over 200 figures and diagrams of the most popular deep learning architectures and layers FREE TO USE in your blog posts, slides, presentations, or papers.

elabftw

:notebook: eLabFTW is the most popular open source electronic lab notebook for research labs.

ggrasp

gs-preprocess

guideseq

Analysis pipeline for the GUIDE-seq assay. For news, see:

guideseq-1

A Bioconductor package for analyzing GUIDE-seq and CIRCLE-seq dataset to identify genome-wide offtargets using genome editing technology CRISPR

imgcrypt

OCI Image Encryption Package

isee

R/shiny interface for interactive visualization of data in objects derived from the SummarizedExperiment class

jina

Cloud-native neural search framework for 𝙖𝙣𝙮 kind of data

maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

mc

MinIO Client is a replacement for ls, cp, mkdir, diff and rsync commands for filesystems and object storage.

music

Multi-subject Single Cell Deconvolution

nextflow-fastp-shiny

a shiny frontend for the nextflow-fastp pipeline

nf-tower

Nextflow Tower system

og-aws

📙 Amazon Web Services — a practical guide

parcel

Computational Pipeline for PARCEL

pokemangps

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sc-type