agat

Another Gff Analysis Toolkit

ai_all_resources

A curated list of Best Artificial Intelligence Resources

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

basics_of_hpc

The example codes discussed in the course are available here.

bese394e_assignments

This repository contains assignment submission for coursework

bioc2020

BioC2020: Where Software and Biology Connect

blackburn

A Hugo theme built using Yahoo's Pure CSS

blog_sample

A place for all of my blog related code.

chipseq-data-analysis-on-hpc

Introduction

complexheatmap_examples

contributions

Contribute Packages to Bioconductor

covidium

## Processed data for covidium

cpg_me

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

create_r_apckages

collection of links on how to create R packages

dea_seurat

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

dexseq_protocol

dge_workshop_salmon_online

dna-to-binary

Bash program for DNA sequence to binary format translation

docker-is-cool

docking-and-virtual-screening-assays

This is a repository of various scripts and meta-scripts that could be written in bash and python programming languages, which could help to run protocols involved in docking and virtual screening. Pricipally tested for use on ubuntu 16. I could be updating the repository gradually! If you have any questions or doubts, please send me an email to [email protected]

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

ea-utils

Automatically exported from code.google.com/p/ea-utils

enimpute

V20190112

enrichmentbrowser

Seamless navigation through combined results of set-based and network-based enrichment analysis

ensemblvep

R Interface to Ensembl Variant Effect Predictor

extract_promoters

Bash script for promoter sequences extraction

gbk2ptt

Converts a GenBank file (*.gbk) to an NCBI Protein Table (*.ptt) file

genemeta

MetaAnalysis for High Throughput Experiments

geneplotter

Graphics related functions for Bioconductor

genomicalignments

Representation and manipulation of short genomic alignments