marencc Goto Github PK

100-days-of-ml-code

100 Days of ML Coding

23andme-impute

Scripts and advice to run IMPUTE2 on 23 and me raw data

450k-analysis-guide

A Practical (And Opinionated) Guide To Analyzing 450K Data

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

assignment_mecc

Basal Prediction Employee Attrition

atac_workshop

ATAC_seq Workshop

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

auto_process_ngs

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

bash-oneliner

Bash Oneliner will focus on bash commands for parsing plain text and biological data, which usually are tsv files(tab-separated values); some of the commands are for Ubuntu system maintaining. I apologize that there won't be any citation of the code, but they are probably from dear Google and Stackoverflow. Not all the code here are oneliner (if the ';' counts..). English and bash are not my first language, so... correct me anytime, tks!!

basic.project

For my use only

bengal_reproducibility

BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data

bgi_vs_illumina_benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq

bioconductor-workshop-1

bioconductor-workshop-2

bioflows

Bioflows is an easy to use package for running bioinformatics workflows.

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

bmn_characterization

book

Compiled and pretty version of labs

books

brainorganoidsreproducibility

Code to go along with Velasco et. al.

car-t

Clonal kinetics and single-cell transcriptional profiling of adoptively transferred CD19-specific CD8+ CAR-T cells

cart19_intsite_manuscript_analysis

Analysis provided in the "Linking outcome of CD19-directed CAR T-cell therapy with genome modification of vector integration" manuscript.

cbc-linux-tutorial

A tutorial on basic operations and using Brown's computing resources

cellannotationtutorial

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

cellity