Comments (3)
Maybe it's worth following this up with the authors of deepTools
to make sure that there is an upper limit in terms of the number of samples. Would be better if an appropriate error message was generated before the rest of the script is executed.
It's not that informative having this many samples plotted for this kind of assessment. Ideally, we would plot all the IPs from the same experimental group along with their corresponding inputs.
from chipseq.
Looks like this has been fixed in deepTools pretty recently: deeptools/deepTools@be9eda6
If we update the pipeline to v3.2.0 of deepTools then the error should be resolved.
Phil
from chipseq.
Addressed in #71
from chipseq.
Related Issues (20)
- No Space left on device error HOT 3
- Make subworkflows & modules available for nf-core tools HOT 1
- Default values for p-value and FDR HOT 2
- Get rid of checkIfExists for params paths HOT 1
- minor "samplesheet_pe.csv" format issue HOT 1
- PHANTOMPEAKQUALTOOLS throws stack overflow exception HOT 1
- MACS2: Too few paired peaks (0) so I can not build the model! HOT 2
- Error with NextSeq trimming HOT 2
- Error running the pipline test in the BWA index step HOT 2
- jobs failing with sigbus and unknown userid errors HOT 1
- Update MACS to v3 HOT 1
- There are multiple files for each of the following file names
- Can't run if there is no control HOT 2
- Improve website on parameters section Alignment Options for argument --save_unaligned HOT 1
- IDR analysis HOT 2
- Remove lib folder to get ready for v2.13.1 template merge HOT 1
- Macs2 Output HOT 2
- The "sample" field from the samplesheet is too lenient HOT 1
- Streamline nf-core/chipseq and nf-core/atacseq by using shared subworkflows
- Get rid of checksamplesheet.py and switch to nf-schema
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from chipseq.