apetkau Goto Github PK
Name: Aaron Petkau
Type: User
Company: Public Health Agency of Canada
Bio: Bioinformatician with the Public Health Agency of Canada.
Aaron Petkau's Projects
2022-01-26-downloading-and-assembling-microbial-sequence-data
Repository for January 26, 2022 "Downloading and assembling microbial sequence data" Workshop by Aaron Petkau
admin-training
Galaxy Admin Training
asmngs20
ASMNGS20 - 2020 Conference Details
assembly-galaxy
assembly-nf
bigsi-examples
bioconda-recipes
Conda recipes for the bioconda channel.
blend4j
blend4j is a JVM partial reimplemenation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.
blend4j-tutorials
A few tutorials for getting started working with Galaxy using blend4j.
card-live-dashboard
cardlive-presentation-2020
cbw_genepi_2021
cmdbench
Quick and easy monitoring and benchmarking for any command's CPU, memory, disk usage and runtime on linux and windows.
comp7934-project
Comparison of BIGSI and HowDe-SBT
comp7944-project
Project on visualizing association rules extracted from covid-19 data.
conda-presentation
core-phylogenomics
Pipeline for identifying core SNPs and building a phylogenetic tree
core-phylogenomics-tutorial
A set of tutorials for the core phylogenomics pipeline.
coresimul
covidcg
A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
docker-galaxy-stable
:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-recipes
Dockerfiles to build Galaxy images
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
etoki
all methods related to Enterobase
fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
ffp-3.19-custom
Modifications to http://sourceforge.net/projects/ffp-phylogeny/ 3.19.
from-samplesheet-test-nf
galaxy-bootstrap
A simple Java package for downloading and configuring Galaxy. Initial work is a framework to test blend4j.
galaxy-dependencies
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