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  • šŸ‘‹ Hi y'all! Iā€™m Jennifer Holmes, you can call me Jenn! I'm a Data Analyst/bioinformatician located in Cleveland and Columbus, Ohio areas and I love working with WGS & NGS, proteomics, plant genomics, business data, large chunks of data and machine learning!
  • šŸŒ± Iā€™m currently learning Nextflow, Snakemake, Django, PostgreSQL, GO and HTML. I'm also playing around with Tableau and PowerBI
  • šŸ‘©ā€šŸ’» Programming Languages I love: R, Perl, Python, C++, Visual Studio, C#, C, t.SQL/mysql and Java.
  • šŸ’žļø Iā€™m looking to collaborate on developing pipelines to make WGS and NGS easier and allow for easier integration! I've worked with bacteria, plants, viruses and cancer. I now work with finance and business data and I still enjoy the challenge of creating visualizations and pipelines to help others enjoy data and learn about bioinformatics/computational biology/data analytics.
  • šŸŒ½ Ask me about: Plant Genomics, Plant WGS/NGS proteomics, Visualizations (Example: Circos, Nextstrain)
  • šŸ“« How to reach me ... Linkedin: https://www.linkedin.com/in/jenniferholmes1345/ ; email: [email protected]

Jennifer Holmes's Projects

08_python_date_time_module icon 08_python_date_time_module

Time is undoubtedly the most critical factor in every aspect of life. Therefore, it becomes very essential to record and track this component. In Python, date and time can be tracked through its built-in libraries. This article on Date and time in Python will help you understand how to find and modify the dates and time using the time and datetime

apptainer icon apptainer

Apptainer: Application containers for Linux

augur icon augur

Pipeline components for real-time phylodynamic analysis

auspice icon auspice

Web app for visualizing pathogen evolution

beekeeper-studio icon beekeeper-studio

Modern and easy to use SQL client for MySQL, Postgres, SQLite, SQL Server, and more. Linux, MacOS, and Windows.

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

cecret icon cecret

Nextflow workflow for our analysis of SARS-COV-2

celery icon celery

Distributed Task Queue (development branch)

clinker icon clinker

Gene cluster comparison figure generator

django icon django

The Web framework for perfectionists with deadlines.

docker icon docker

Docker - the open-source application container engine

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

draggan icon draggan

Official Code for DragGAN (SIGGRAPH 2023)

dsq icon dsq

Commandline tool for running SQL queries against JSON, CSV, Excel, Parquet, and more.

galaxy icon galaxy

Data intensive science for everyone.

jh36 icon jh36

Config files for my GitHub profile.

kubernetes icon kubernetes

Production-Grade Container Scheduling and Management

microbetrace icon microbetrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

mssql-docker icon mssql-docker

Official Microsoft repository for SQL Server in Docker resources

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mykrobe icon mykrobe

Antibiotic resistance prediction in minutes

mykrobe_tb_workflow icon mykrobe_tb_workflow

A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe

mysql icon mysql

Docker Official Image packaging for MySQL Community Server

ncov icon ncov

Nextstrain build for novel coronavirus SARS-CoV-2

nextflow icon nextflow

A DSL for data-driven computational pipelines

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