jh36 Goto Github PK

followers: 65.0 following: 326.0 repos: 66.0 gists: 0.0

Name: Jennifer Holmes

Type: User

Bio: Data Analyst| Bioinformatician | Coffee Lover | Cat Momma

Location: Columbus, Ohio

👋 Hi y'all! I’m Jennifer Holmes, you can call me Jenn! I'm a Data Analyst/bioinformatician located in Cleveland and Columbus, Ohio areas and I love working with WGS & NGS, proteomics, plant genomics, business data, large chunks of data and machine learning!
🌱 I’m currently learning Nextflow, Snakemake, Django, PostgreSQL, GO and HTML. I'm also playing around with Tableau and PowerBI
👩‍💻 Programming Languages I love: R, Perl, Python, C++, Visual Studio, C#, C, t.SQL/mysql and Java.
💞️ I’m looking to collaborate on developing pipelines to make WGS and NGS easier and allow for easier integration! I've worked with bacteria, plants, viruses and cancer. I now work with finance and business data and I still enjoy the challenge of creating visualizations and pipelines to help others enjoy data and learn about bioinformatics/computational biology/data analytics.
🌽 Ask me about: Plant Genomics, Plant WGS/NGS proteomics, Visualizations (Example: Circos, Nextstrain)
📫 How to reach me ... Linkedin: https://www.linkedin.com/in/jenniferholmes1345/ ; email: [email protected]

Jennifer Holmes's Projects

numpy

The fundamental package for scientific computing with Python.

ohncov

COVID19 Ohio Nextstrain Repo maintained by ODH

pgbouncer

lightweight connection pooler for PostgreSQL

phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

plotly.py

The interactive graphing library for Python :sparkles: This project now includes Plotly Express!

Mirror of the official PostgreSQL GIT repository. Note that this is just a *mirror* - we don't work with pull requests on github. To contribute, please see https://wiki.postgresql.org/wiki/Submitting_a_Patch

postgres-1

Docker Official Image packaging for Postgres

powerbi_bootcamp

public_health_bioinformatics

Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

python-prompt-toolkit

Library for building powerful interactive command line applications in Python

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

roadmap

Welcome to the Public Roadmap for All Things Docker! We welcome your ideas.

rst-cheatsheet

A two-page cheatsheet for restructured text

singularity

Singularity: Application containers for Linux

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

snp-pipeline

SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.

south-carolina

spades

SPAdes Genome Assembler

spriggan

Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.

sql

sql code for projects related to data analyst role

sql-server-samples

Azure Data SQL Samples - Official Microsoft GitHub Repository containing code samples for SQL Server, Azure SQL, Azure Synapse, and Azure SQL Edge

sra-tools

SRA Tools

jh36 Goto Github PK

Jennifer Holmes's Projects

Recommend Projects

Recommend Topics

Recommend Org