benfeitas Goto Github PK
Name: Rui Benfeitas
Type: User
Company: NBIS - National Bioinformatics Infrastructure Sweden
Location: Stockholm, Sweden
Blog: benfeitas.net
Rui Benfeitas's Projects
2019-04-03-ttt-stockholm
The Carpentries Train the Trainer, 03-04 April, 2019, Stockholm, Sweden
benfeitas.github.io
Code for personal repo
benfeitas_binder
bioinformatics_resources
Useful bioinformatic resources
carpentries-create-workshop
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
clustergrammer-widget
The Clustergrammer interactive Jupyter notebook widget
excelerate-scrnaseq
Single RNA-seq data analysis with R (Finland, May, 2019)
harmonizome
Source code for the Harmonizome
hic_tools
A collection of tools for Hi-C data analysis
ipypublish
A workflow for creating and editing publication ready scientific reports and presentations, from one or more Jupyter Notebooks, without leaving the browser!
jupyter_notebook_testing
mixomics
Master and devel repo for mixOmics on BioC
phd2018
Repository for PhD Course 2018: Systems Biology of Human Metabolism and Gut Microbiome
project_s3_new_rep
moved many files and foud it easier to make a new rep
projectdrugrepurposing
python-ecology-lesson
:page_with_curl: Data Carpentry Python lessons on ecology.
theme_testing
tpmcalculator
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
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