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bacwgspipe

A Snakemake workflow for a complete analysis of bacterial whole-genome sequencing data.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

gatk-mitochondria-pipeline

Snakemake workflow for GATK SNP and INDEL variant calling on mitochondria DNA

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

hub-mirror

🚀 gcr.io、registry.k8s.io、k8s.gcr.io、quay.io、ghcr.io 等国外镜像加速下载服务

microbial_amr_ml

Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)

mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

mykrobe

Antibiotic resistance prediction in minutes

tb-resources

List of online databases and resources for Mycobacterium Tuberculosis

tb_pipeline

tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

tbseqpipe

A snakemake workflow for analyzing illumina WGS data of Mycobacterium Tuberculosis complex isolates

utilities

General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

uvp

Mycobacterium tuberculosis next generation sequence analysis

wochenende

A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3