doaneas Goto Github PK

align2rawsignal

Automatically exported from code.google.com/p/align2rawsignal

annotables

R data package for annotating/converting Gene IDs

archipseq

chip-seq analysis pipeline scripts

ashnatwedding

atacflow

Analysis pipeline for ATACseq data using Nextflow

atacflowpooled

atacseq

ATACseq data processing pipeline

atacseqcshl

ATAC-seq Tutorial CSHL

bassounds.github.io

bayesianfun

Bayesian work with Josh

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bds_atac

ATAC-seq processing pipeline

bioinfofinal

biostat-578

A repository for all of my teaching material

btry6831

Bioinformatics programming scripts

chip-nf

An automated ChIP-seq pipeline using Nextfow

chip-seq_preprocess

A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.

chipflow

chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

chromfx

ATAC-seq tools R package

configs

Config files used to define parameters specific to compute environments at different Institutions

correlation

correlate expression with histone modifications (and TFBS)

crispr-mageck-nf

Analyze CRISPR and shRNA functional genetic screening data

crispranalyzer

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

cs2043_scripts

Unix_scripting

diffloop

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/diffloop.html Contributions: https://github.com/aryeelab/diffloop. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=diffloop or https://github.com/aryeelab/diffloop/issues.

dijon

centos7 singularity container for HPC

distiller-nf

a modular Hi-C mapping pipeline

dlbcl_nat_med_april_2018

doaneas.github.io