Topic: genome-assembly Goto Github
Some thing interesting about genome-assembly
Some thing interesting about genome-assembly
genome-assembly,Close assembly gaps using long-reads at high accuracy.
User: a-ludi
Home Page: https://a-ludi.github.io/dentist/
genome-assembly,SPAdes Genome Assembler
Organization: ablab
Home Page: http://ablab.github.io/spades/
genome-assembly, A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
User: adamtaranto
genome-assembly,Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
User: adigenova
genome-assembly,Compacted and colored de Bruijn graph construction and querying
Organization: algbio
genome-assembly,JTK -- a regional diploid genome assembler
User: ban-m
genome-assembly,Linear-time de novo Long Read Assembler
Organization: bcgsc
genome-assembly,⛓ Correct misassemblies using linked AND long reads
Organization: bcgsc
Home Page: https://bcgsc.github.io/tigmint/
genome-assembly,A pipeline for high-quality bacterial genome construction using ONT sequencing
Organization: beatsonlab-microbialgenomics
genome-assembly,A modern genomics framework for julia
Organization: biojulia
Home Page: https://biojulia.dev
genome-assembly,Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
User: bpucker
Home Page: https://doi.org/10.1101/607390
genome-assembly,find large indels (in the blind spot between GATK/freebayes and SV callers)
User: brentp
genome-assembly,Viral genomics analysis pipelines
Organization: broadinstitute
genome-assembly,BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
Organization: cmu-safari
genome-assembly,CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Organization: compbiol
genome-assembly,Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
User: drl
genome-assembly,Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
User: fmalmeida
Home Page: https://mpgap.readthedocs.io/en/latest/
genome-assembly,Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Organization: gabaldonlab
genome-assembly,Long-reads Gap-free Chromosome-scale Assembler
Organization: ganlab
genome-assembly,Transformer-based sequence correction method for genome assembly polishing
Organization: google
genome-assembly,Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
Organization: hingeassembler
Home Page: http://genome.cshlp.org/content/27/5/747.full.pdf+html?sid=39918b0d-7a7d-4a12-b720-9238834902fd
genome-assembly,Detailed bioinformatics scripts and methods used in the NAM genome paper.
Organization: huffordlab
Home Page: https://nam-genomes.org
genome-assembly,Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
User: jiaolaboratory
Home Page: https://doi.org/10.1038/s41467-023-42336-w
genome-assembly,Suite of tools for use in genome assembly and consensus. Work in progress.
User: jteutenberg
genome-assembly,Signal-level algorithms for MinION data
User: jts
genome-assembly,H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
User: kishwarshafin
genome-assembly,Large genome reassembly based on Hi-C data, continuation of GRAAL
Organization: koszullab
genome-assembly,A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
User: linxingchen
genome-assembly,MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
User: linzhi2013
Home Page: https://doi.org/10.1093/nar/gkz173
genome-assembly,Learning to untangle genome assembly with graph neural networks.
User: lvrcek
genome-assembly,RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
User: malonge
genome-assembly,Tools for fast and flexible genome assembly scaffolding and improvement
User: malonge
genome-assembly,Visualization tool for (meta)genome assembly graphs
Organization: marbl
Home Page: https://marbl.github.io/MetagenomeScope/
genome-assembly,De novo genome assembly and multisample variant calling
Organization: mcveanlab
Home Page: https://github.com/mcveanlab/mccortex/wiki
genome-assembly,A pipeline for viral identification from metagenomic samples
Organization: ncbi-hackathons
genome-assembly,A bioinformatic toolkit to align genome assemblies into pangenome graphs
Organization: neherlab
Home Page: https://neherlab.github.io/pangraph
genome-assembly,Fast and accurate de novo assembler for long reads
Organization: nextomics
genome-assembly,Repeat-aware polishing genomes assembled using HiFi long reads
Organization: nextomics
genome-assembly,Simple bacterial assembly and annotation pipeline
Organization: nf-core
Home Page: https://nf-co.re/bacass
genome-assembly,LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
User: oushujun
Home Page: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
genome-assembly,Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
User: pmenzel
genome-assembly,Pipelines for the production of Treeval data
Organization: sanger-tol
Home Page: https://pipelines.tol.sanger.ac.uk/treeval
genome-assembly, An algorithm for centromere assembly using long error-prone reads
User: seryrzu
genome-assembly,Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
User: tanghaibao
genome-assembly,Master Algorithmic Programming Techniques. Learn algorithms through programming and advance your software engineering or data science career
User: thegeekiestone
genome-assembly,🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
User: tseemann
genome-assembly,Ultra-fast and memory-efficient (meta-)genome assembler
User: voutcn
Home Page: http://www.ncbi.nlm.nih.gov/pubmed/25609793
genome-assembly,A fast tool for hybrid genome assembly of long and short reads
Organization: vpc-ccg
genome-assembly,A program for assessing the T2T genome continuity
User: yeeus
genome-assembly,LRSDAY: Long-read Sequencing Data Analysis for Yeasts
User: yjx1217
Home Page: https://yjx1217.github.io/Yeast_PacBio_2016/software/
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