Topic: comparative-genomics Goto Github
Some thing interesting about comparative-genomics
Some thing interesting about comparative-genomics
comparative-genomics,Micro 612 genomics workshop
User: alipirani88
Home Page: http://comparative-genomics.readthedocs.io/en/latest/index.html#
comparative-genomics,An R package to infer and analyze synteny networks from protein sequences
User: almeidasilvaf
Home Page: https://almeidasilvaf.github.io/syntenet/
comparative-genomics,𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
Organization: amnh
comparative-genomics,Pan-genomic sequence analysis
User: chadlaing
Home Page: http://lfz.corefacility.ca/panseq
comparative-genomics,CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Organization: compbiol
comparative-genomics,FastOMA is a scalable software package to infer orthology relationship.
Organization: dessimozlab
comparative-genomics,Taxon-aware analysis of clustered protein sequences
User: drl
Home Page: https://kinfin.readme.io
comparative-genomics,Genome wide orthology inference and dNdS estimation
Organization: drostlab
Home Page: https://drostlab.github.io/orthologr/
comparative-genomics,EzAAI - High Throughput Prokaryotic AAI Calculator
User: endixk
Home Page: http://leb.snu.ac.kr/ezaai
comparative-genomics,The Ensembl Compara Perl API and SQL schema
Organization: ensembl
Home Page: http://www.ensembl.org/info/docs/api/compara/
comparative-genomics,Chromosome visualization for the web
User: eweitz
Home Page: https://eweitz.github.io/ideogram
comparative-genomics,A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
User: gsneha26
comparative-genomics,Computational Biology & Bioinformatics Resources
User: jananiravi
comparative-genomics,A comparative genomics workflow using Nextflow, conda, Julia and R
User: jeffersonfparil
comparative-genomics,a versatile toolkit for processing and analyzing diverse types of sequence data
User: jlsteenwyk
Home Page: https://jlsteenwyk.com/BioKIT/
comparative-genomics,AccuSyn: An Accurate Web-based Genome Synteny Browser
User: jorgenunezsiri
Home Page: https://accusyn.usask.ca/
comparative-genomics,genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
User: josuebarrera
comparative-genomics,zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Organization: kalan-lab
comparative-genomics,Recentrifuge: robust comparative analysis and contamination removal for metagenomics
User: khyox
Home Page: http://www.recentrifuge.org
comparative-genomics,Build a partitioned pangenome graph from microbial genomes
Organization: labgem
Home Page: https://ppanggolin.readthedocs.io/en/latest/
comparative-genomics,Workflow for identifying and classifying homologous gene/protein sequences
User: laelbarlow
comparative-genomics,Federating genomes with love (and synteny derived from functional annotations)
Organization: legumeinfo
Home Page: https://gcv.legumeinfo.org/
comparative-genomics,CoGe (Comparative Genomics) Platform
Organization: lyonslab
Home Page: http://genomevolution.org
comparative-genomics,
User: ma-compbio
comparative-genomics,A fast whole-genome aligner based on de Bruijn graphs
Organization: medvedevgroup
Home Page: http://medvedevgroup.com/
comparative-genomics,A fast constructor of the compressed de Bruijn graph from many genomes
Organization: medvedevgroup
comparative-genomics,An analysis and visualization platform for 'omics data
Organization: merenlab
Home Page: http://merenlab.org/software/anvio
comparative-genomics,A tool for drawing ANI clustermap between all-vs-all microbial genomes
User: moshi4
comparative-genomics,A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
User: moshi4
comparative-genomics,Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
User: moshi4
comparative-genomics,Easy-to-use web application for visualization and comparison of genomes in Genbank file
User: moshi4
comparative-genomics,Microbial Genome Circular plotting tool for comparative genomics using Circos
User: moshi4
comparative-genomics,Plot genome alignment figure using progressiveMauve & genoPlotR
User: moshi4
comparative-genomics,Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
User: moshi4
Home Page: https://moshi4.github.io/pyCirclize/
comparative-genomics,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
comparative-genomics,🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Organization: neurogenomics
Home Page: https://doi.org/doi:10.18129/B9.bioc.orthogene
comparative-genomics,Eukaryotic Genome Annotation Pipeline
User: nextgenusfs
Home Page: http://funannotate.readthedocs.io
comparative-genomics,Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
User: orangesi
comparative-genomics,The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
User: paulstothard
Home Page: https://paulstothard.github.io/cgview_comparison_tool/
comparative-genomics,Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
User: plantdr430
comparative-genomics,Scripts and procedures for detecting positively selected genes and codons in primates
User: robinvanderlee
Home Page: https://doi.org/10.1093/nar/gkx704
comparative-genomics,Codebase for the domain adaptation (cross-species TF binding prediction) project.
Organization: seqcode
comparative-genomics,A toolkit for prokaryotic comparative genomics
User: swittouck
comparative-genomics,Python library to facilitate genome assembly, annotation, and comparative genomics
User: tanghaibao
comparative-genomics,Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
User: tanghaibao
Home Page: http://chibba.agtec.uga.edu/duplication/mcscan/
comparative-genomics,Guided synteny alignment between duplicated genomes (within specified quota constraint)
User: tanghaibao
comparative-genomics,Performs MCMCglmm on multiple phylogenetic trees
User: tguillerme
comparative-genomics,A grammar of graphics for comparative genomics
User: thackl
Home Page: https://thackl.github.io/gggenomes/
comparative-genomics,Comparison of Hi-C Experiments using Structural Similarity.
Organization: vaquerizaslab
comparative-genomics,HyPhy: Hypothesis testing using Phylogenies
Organization: veg
Home Page: http://www.hyphy.org
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