Topic: microbial-genomics Goto Github
Some thing interesting about microbial-genomics
Some thing interesting about microbial-genomics
microbial-genomics,CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
User: agmcfarland
microbial-genomics,Collection of scripts for bacterial genomics
User: aleimba
microbial-genomics,
User: aschuerch
Home Page: https://aschuerch.github.io/Microbial-Genomics-2018/
microbial-genomics,Scripts to support clustering of cgMLST allele profiles
Organization: bccdc-phl
microbial-genomics,Nextflow wrapper for the dragonflye assembler, with additional QC
Organization: bccdc-phl
microbial-genomics,A cgMLST pipeline based on the KMA aligner
Organization: bccdc-phl
microbial-genomics,Generate simulated oxford nanopore reads from a reference sequence
Organization: bccdc-phl
microbial-genomics,Database for storage of M. tuberculosis genomics analysis results
Organization: bccdc-phl
Home Page: https://bccdc-phl.github.io/tb-db/
microbial-genomics,Nextflow Wrapper for TBProfiler
Organization: bccdc-phl
microbial-genomics,A pipeline for high-quality bacterial genome construction using ONT sequencing
Organization: beatsonlab-microbialgenomics
microbial-genomics,MiGA: Microbial Genomes Atlas
Organization: bio-miga
microbial-genomics,A grammar for describing microbial genotypes and phenotypes
Organization: biosustain
Home Page: https://gnomic.readthedocs.io/
microbial-genomics,A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Organization: cidgoh
microbial-genomics,🦠📇 Compare prokaryotic genomic assemblies
User: cmkobel
microbial-genomics,A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
User: cmorganl
microbial-genomics,An R package, permissR enables finding permissive, non-coding sites in bacterial genomes.
User: daniellemstevens
microbial-genomics,A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
User: dinasv
microbial-genomics,An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Organization: giffordlabcvr
Home Page: http://glue-tools.cvr.gla.ac.uk
microbial-genomics,A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Organization: hallamlab
microbial-genomics,A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
User: iferres
Home Page: https://iferres.github.io/pagoo/
microbial-genomics,Simulate pangenomes according to the IMG + Neutral models
User: iferres
microbial-genomics,Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
User: j3551ca
microbial-genomics,A reference-free statistical approach to diversity-generating & mobile genetic element discovery
User: jordiabante
microbial-genomics,Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
User: joycewang914
microbial-genomics,PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
User: kiranjavkar
microbial-genomics,Build a partitioned pangenome graph from microbial genomes
Organization: labgem
Home Page: https://ppanggolin.readthedocs.io/en/latest/
microbial-genomics,Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
Organization: lanlab
microbial-genomics,Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers
Organization: lanlab
microbial-genomics,Estimate metagenomic coverage and sequence diversity
User: lmrodriguezr
Home Page: http://enve-omics.ce.gatech.edu/nonpareil/
microbial-genomics,Evaluating Nanopore-based bacterial variant calling
User: mbhall88
Home Page: https://doi.org/10.1101/2024.03.15.585313
microbial-genomics,A pipeline for bioinformatics analysis of bacterial genomes
Organization: mdu-phl
microbial-genomics,In silico serotype prediction for Listeria monocytogenes
Organization: mdu-phl
microbial-genomics,A tool for drawing ANI clustermap between all-vs-all microbial genomes
User: moshi4
microbial-genomics,A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
User: moshi4
microbial-genomics,Easy-to-use web application for visualization and comparison of genomes in Genbank file
User: moshi4
microbial-genomics,Microbial Genome Circular plotting tool for comparative genomics using Circos
User: moshi4
microbial-genomics,Python implementation of barrnap (Bacterial ribosomal RNA predictor)
User: moshi4
microbial-genomics,Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
User: moshi4
Home Page: https://moshi4.github.io/pyCirclize/
microbial-genomics,A genome visualization python package for comparative genomics
User: moshi4
Home Page: https://moshi4.github.io/pyGenomeViz
microbial-genomics,Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
User: oschwengers
microbial-genomics,Fast Whole-Genome Similarity (ANI) Estimation
Organization: parbliss
microbial-genomics,Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
Organization: public-health-bioinformatics
microbial-genomics,Comparative TraDIS analysis
Organization: quadram-institute-bioscience
microbial-genomics,Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
User: serka-m
microbial-genomics,Lightweight bioinformatics pipeline for microbial genome recovery
User: serka-m
microbial-genomics,Tools for phylogenetic data analysis including visualization and cluster-computing support.
User: smdabdoub
Home Page: http://phylotoast.org
microbial-genomics,Genomewide Epistasis Analysis on Bacteria
User: sudaraka88
microbial-genomics,Get microbial sequence data easier and faster
User: tseemann
microbial-genomics,A comprehensive and customizable R package for microbiome analysis.
Organization: vallenderlab
Home Page: https://vallenderlab.github.io/MicrobiomeR/
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