Topic: 16s Goto Github
Some thing interesting about 16s
Some thing interesting about 16s
16s,A nextflow pipeline for the analysis of 16S amplicon data built around RExMap
User: angelovangel
16s,A unified searchable database of 16S rRNA amplicon libraries
Organization: arriam-lab2
Home Page: http://arriam-lab2.github.io/amquery/
16s,Benbow Lab at Michigan State University, Tutorials/example data for analysis of: 16S data, VCF files
Organization: benbowlab
Home Page: https://benbowlab.github.io/
16s,Mothur procedures for 16S and ITS analysis
Organization: biocorecrg
16s,The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
User: brochado-kith
16s,MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
16s,Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
User: carden24
16s,Easy-to-use tool facilitating work with Mothur.
User: dizak
Home Page: https://dizak.github.io/mothulity
16s,Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"
User: eldeveloper
Home Page: https://www.nature.com/articles/nmicrobiol2016177
16s,SINA - Reference based multiple sequence alignment
User: epruesse
Home Page: https://sina.readthedocs.io
16s,:ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
User: erictleung
16s,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
16s,Simple script to generate Krona charts for all samples in an OTU table file
User: genomicamicrob
16s,A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
User: headonpillow
16s,Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
Organization: ifremer-bioinformatics
Home Page: https://gitlab.ifremer.fr/bioinfo/SAMBA-nextflow
16s,accessory functions for processing microbial community data
User: itsmisterbrown
16s,Seplos Controller mit Webseite Der Esp8266 ist über ein Rs485 Modul mit dem Seplos BMS verbunden und kann diesem seine Daten entlocken. Shutdown Button: Das BMS wird ausgeschaltet , selbe Art als ob man länger auf dem BMS tastschalter bleibt. Kurzum die Firmware die es hier zum Download gibt, liest das Bms aus und es lässt sich per Button Klick abschalten. Es fehlen derzeit noch die Warnings . Was kann der ESP8266 Seplos Controller : Mqtt Schnittstelle, Payload ist ein Json Array , die Topic Addressen werden in der ESP Weg UI angezeigt und sind für jeden Esp induviduell unique. Http Schnittstelle, Daten werden als Json Array ausgegeben SAVE CONTROLER Button ist für spätere Funktionen reserviert Derzeit kann nur ein BMS damit ausgelesen werden, Multipackreading ... coming soon Die SOC Zeile blinkt wann es einen Discharge oder Charge übers BMS gibt, ansonsten bei Current==0 , bleibt die Zeile weiss und blinkt nicht. Die SOC Spalte ist wie im Batteriemonitor farbig 0-30% red, 30-50% yellow, 50-100% green! Esp Herzschlag bekommt die zusätzliche Bezeichnung DIS anghängt wann die Batterie Leistung abgeben muss!
User: klausli
16s,Trying to help a colleague get a 16s-rRNA-Sanger snakemake pipeline working.
User: leahkemp
Home Page: https://leahkemp.github.io/running_16S_rRNA_pipeline/
16s,Software for monitoring metagenomes using nanopore sequencing reads
User: lucast122
16s,A Nextflow full-length 16S profiling pipeline for ONT reads
Organization: microgenlab
16s,The is mostly a wrapper tool using phyloseq and microbiome R packages.
User: microsud
Home Page: https://microsud.github.io/microbiomeutilities/
16s,Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
Organization: microucph
Home Page: https://microucph.github.io/amplicon_data_analysis/
16s,Analysis for amplicon data
User: natmurad
16s,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
16s,A comprehensive, compact, and automatically curated 16S database
Organization: ohnosequences
16s,rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
Organization: ostash-group
Home Page: https://ostash-group.github.io/rRNADif/
16s,code to reproduce AIH results
User: philippmuench
16s,Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code
User: pjtorres
16s,:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.
Organization: pnnl
Home Page: https://pnnl.github.io/hundo/
16s,This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.
Organization: pombertlab
16s,Dadaist2 🟨 Highway to R
Organization: quadram-institute-bioscience
Home Page: https://quadram-institute-bioscience.github.io/dadaist2/
16s,Collection of commonly used RDP Tools for easy building
Organization: rdpstaff
16s,Compare different differential abundance and expression methods
User: russel88
16s,Various functions for analysis of microbial community data
User: russel88
16s,Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
User: shandley
16s,Meta16s - an all-in-one solution for streamlined 16s analyses
User: siwolf
16s,Tools for phylogenetic data analysis including visualization and cluster-computing support.
User: smdabdoub
Home Page: http://phylotoast.org
16s,Microbiome Study of Lupus Patients
User: vaxherra
16s,A Collection of Bioinformatics Projects
User: wijerasa
16s,Bioinformatic data analysis scripts and pipelines
User: xuan13hao
16s,Tools for metagenomic assembly processing.
Organization: yaccconstructor
16s,Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
User: ycl6
Home Page: https://ycl6.github.io/16S-Demo/
16s,16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
User: ycl6
16s,This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
User: zubair2021
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