Topic: qiime2 Goto Github
Some thing interesting about qiime2
Some thing interesting about qiime2
qiime2,16S rRNA sequencing data analysis of mice fed with pectin-based prebiotic fiber using both QIIME2 and R.
User: antonionavarrorubira
qiime2,agp data to understand gut microbiome and childhood obesity.
User: baijinbing
qiime2,A fast and scalable phylogenetic tree viewer for microbiome data analysis
Organization: biocore
qiime2,Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
Organization: biocore
qiime2,Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP
Organization: bioinfonupeb
qiime2,Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"
Organization: bioinfonupeb
qiime2,EXPOSIÇÃO AGUDA AO CHUMBO E SUA RELAÇÃO COM ALTERAÇÕES NO STATUS REDOX E DISBIOSE INTESTINAL EM RATOS
Organization: bioinfonupeb
qiime2,scripts for microbiome analysis
Organization: biology-examples
qiime2,QIIME2 worklflow. From raw data to a feature table.
User: biomarv
qiime2,q2-shared_asv is a QIIME 2 plugin for shared ASV analysis.
Organization: biota-inc
qiime2,QIIME2 plugin for PCA analysis of protein sequence phylogeny.
Organization: bokulich-lab
qiime2,Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
User: bryanabuchery
qiime2,Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
User: cafferychen777
Home Page: https://www.microbiomestat.wiki/
qiime2,Metabarcoding analysis pipeline, using DADA2 and qiime2
User: davidescarpetta
qiime2,Welcome to 'Metagenomics in R for Dummies'! Are you interested in learning the essentials of metagenomics in a short period of time? You've reached the right repos!
User: elcornevic
qiime2,Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Organization: emoryintegratedcomputationalcore
qiime2,Files for the MiCoMo project and manuscript
User: focussash
qiime2,Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
User: francklejzerowicz
qiime2,Materials and presentation for the 2022 ISB Microbiome course.
Organization: gibbons-lab
Home Page: https://isbscience.org/microbiome2022/
qiime2,Materials and presentation for the 2023 ISB Microbiome course.
Organization: gibbons-lab
Home Page: https://isbscience.org/microbiome2023
qiime2,Effect size calculations for microbiome data
User: gibsramen
qiime2,qiime2 decontam plugin
User: hsapers
qiime2,This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
User: johannabosch
qiime2,This is a workflow for 16S rRNA analysis.
Organization: mbbu
Home Page: https://mbbu.github.io/16S-mini-project/
qiime2,Comparative study of soil microbiome using QIIME2
User: meeranhussain
qiime2,This repository describes the methods used to test different sci-kit learn feature selection methods as part of Qiime2 q2-classifier.
User: metu-o
qiime2,The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
User: mghotbi
Home Page: https://herptilemicrobiomes.org/team/
qiime2,A Qiime plugin for MICOM.
Organization: micom-dev
Home Page: https://micom-dev.github.io/q2-micom
qiime2,Analysis for amplicon data
User: natmurad
qiime2,Amplicon sequencing data analysis of skin microbiota in the black olm subspecies using Qiime2
User: nezapajek
qiime2,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
qiime2,QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
User: noriakis
Home Page: https://github.com/noriakis/q2-pathway
qiime2,Snakemake version of QIIME2
Organization: ohmeta
qiime2,Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
User: olabiyi
qiime2,Microbiome analysis with QIIME2
Organization: plantgghlab
qiime2,Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay
User: rjstevick
qiime2,Study of farmed oysters and nitrogen cycling in Point Judith Pond, RI. Scripts for analysis of 16S rRNA amplicon and metatranscriptomic data.
User: rjstevick
qiime2,Qiime 2, an advanced bioinformatics platform, specializes in analyzing metagenomic data. With a modular plugin architecture, integrated workflows, and visualization tools, Qiime 2 facilitates reproducible and transparent analyses, supporting both command-line and GUI interactions.
User: saifeldeen-bio
qiime2,A Python package for microbiome sequencing analysis with QIIME 2
User: sbslee
Home Page: https://dokdo.readthedocs.io
qiime2,The source code for the MIND pipeline paper
Organization: segrelab
qiime2,🦠 SporeFlow: Fungal ITS metataxonomics pipeline
User: sergioalias
qiime2,Data analysis using QIIME2
User: sharupaul
qiime2,Code and raw data for *Galaxea fascicularis* microbiome data analysis
User: spunting
qiime2,Qiime2 Artifact eXtractor
User: telatin
Home Page: https://telatin.github.io/qax/
qiime2,Microbial community dynamics during key life-history transitions in the chemosymbiotic mussel, Gigantidas childressi
User: tessabeaver
Home Page: https://cedar.wwu.edu/cgi/viewcontent.cgi?article=2145&context=wwuet
qiime2,This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio
User: zubair2021
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