Topic: amplicon Goto Github
Some thing interesting about amplicon
Some thing interesting about amplicon
amplicon,R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
User: adrientaudiere
Home Page: https://adrientaudiere.github.io/MiscMetabar/
amplicon,Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
User: arkadiy-garber
amplicon,A unified searchable database of 16S rRNA amplicon libraries
Organization: arriam-lab2
Home Page: http://arriam-lab2.github.io/amquery/
amplicon,Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
User: aveglia
amplicon,A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.
Organization: bailey-lab
Home Page: https://bailey-lab.github.io/miplicorn
amplicon,Accurate sample inference from amplicon data with single nucleotide resolution
User: benjjneb
Home Page: http://benjjneb.github.io/dada2/
amplicon,Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
User: benjjneb
Home Page: https://benjjneb.github.io/decontam/
amplicon,micca - MICrobial Community Analysis
Organization: compmetagen
Home Page: http://compmetagen.github.io/micca
amplicon,Mirror of amplicon-qtl repository.
User: ebete
Home Page: https://gitlab.bioinf.nioo.knaw.nl/ThomG/amplicon-qtl
amplicon,Mirror of micro-qtl repository.
User: ebete
Home Page: https://gitlab.bioinf.nioo.knaw.nl/ThomG/micro-qtl
amplicon,READY TO USE. Repository containing guidelines and templates for archiving amplicon sequencing data with ESS-DIVE repository.
Organization: ess-dive-community
Home Page: https://ess-dive.gitbook.io/amplicon-sequencing-reporting-format/
amplicon,Visualizes breakpoint graphs generated by AmpliconArchitect; simulates the effects of long read data on the graph
User: fedarko
amplicon,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
amplicon,In-silico PCR, primer design and padlock design for in-situ sequencing
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/
amplicon,In-silico PCR amplification on complete genomes
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/silica
amplicon,MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
Organization: hku-bal
amplicon,Bioinformatics Pipeline
User: huazou
Home Page: https://zouhua.top/
amplicon,A python package to process UMI tagged mixed amplicon metabarcoding data.
User: jasperboom
amplicon,Targeted characterisation of short structural variation.
User: jfjlaros
amplicon,PCAS: check the coverage of your primer pair before putting on amplicon sequencing
User: junyu25
amplicon,Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
User: lucapinello
amplicon,Sequence Read Archive Classification
User: majid-soheili
amplicon,zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
Organization: metagenlab
Home Page: https://zamp.readthedocs.io/en/latest/
amplicon,The is mostly a wrapper tool using phyloseq and microbiome R packages.
User: microsud
Home Page: https://microsud.github.io/microbiomeutilities/
amplicon,A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
User: microsud
Home Page: https://microsud.github.io/Tools-Microbiome-Analysis/
amplicon,Probe-Maker is intended for design of hybridisation probes for Plasmodium falciparum for long-read amplicon sequencing.
User: myonaung
amplicon,Analysis for amplicon data
User: natmurad
amplicon,Assembly and intrahost/low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/viralrecon
amplicon,extract long read subsequences from a pair of primers
Organization: nucleomics-vib
amplicon,GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
User: pirovc
Home Page: https://pirovc.github.io/grimer/
amplicon,Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code
User: pjtorres
amplicon,<pilot> in-silico amplicons optimised for phylogenetic signal
Organization: quadram-institute-bioscience
amplicon,R functions and workflow for submitting amplicon sequence data to the ENA.
User: robiwangriff
amplicon,process raw reads from ubiome
User: rwst
amplicon,This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
User: sabahzero
Home Page: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212355
amplicon,A pipeline to analyse marine fish amplicon data
User: sebrauschert
amplicon,A long-read analysis toolbox for cancer and population genomics
User: tobiasrausch
amplicon,Versatile open-source tool for microbiome analysis
User: torognes
amplicon,Reference-based consensus creation
Organization: uphl-biongs
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