Topic: pacbio Goto Github
Some thing interesting about pacbio
Some thing interesting about pacbio
pacbio,Close assembly gaps using long-reads at high accuracy.
User: a-ludi
Home Page: https://a-ludi.github.io/dentist/
pacbio,Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Organization: ablab
Home Page: https://ablab.github.io/IsoQuant/
pacbio,Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
User: adigenova
pacbio,Predict plasmids from uncorrected long read data
User: andrewjpage
pacbio,LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
User: anuradhawick
Home Page: https://doi.org/10.4230/LIPIcs.WABI.2021.11
pacbio,Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
User: bpucker
Home Page: https://doi.org/10.1101/607390
pacbio,Bioinformatics software list
User: bretonics
pacbio,[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Organization: chanzuckerberg
pacbio,Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
User: chhylp123
pacbio,Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
User: fmalmeida
Home Page: https://mpgap.readthedocs.io/en/latest/
pacbio,A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
User: fmalmeida
Home Page: https://ngs-preprocess.readthedocs.io/
pacbio,Structural variation caller using third generation sequencing
User: fritzsedlazeck
pacbio,A straightforward and complete next-generation sequencing read simulator
Organization: galantelab
Home Page: https://galantelab.github.io/sandy/
pacbio,Long-reads Gap-free Chromosome-scale Assembler
Organization: ganlab
pacbio,A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Organization: genetalks
pacbio,Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Organization: hku-bal
pacbio,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
pacbio,ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Organization: hku-bal
pacbio,Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
User: hmpnk
pacbio,Coronavirus (SARS-Cov-2) sequencing analysis
User: magdoll
pacbio,IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
User: matthiaslienhard
Home Page: https://isotools.readthedocs.io/en/latest/
pacbio,Quality control plotting for long reads
User: mbhall88
pacbio,simplified cellranger for long-read data
User: mehdiborji
pacbio,A Python library to visualize and analyze long-read transcriptomes
Organization: mortazavilab
Home Page: https://freese.gitbook.io/swan/
pacbio,Technology agnostic long read analysis pipeline for transcriptomes
Organization: mortazavilab
pacbio,Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Organization: mortazavilab
pacbio,A collection of publications on comparison of high-throughput sequencing technologies.
User: nazeeefa
pacbio,Fast and accurate de novo assembler for long reads
Organization: nextomics
pacbio,Amplicon sequencing analysis workflow using DADA2 and QIIME2
Organization: nf-core
Home Page: https://nf-co.re/ampliseq
pacbio,Lima - Demultiplex Barcoded PacBio Samples
Organization: pacificbiosciences
pacbio,CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Organization: pacificbiosciences
pacbio,An HLA star-calling tool for PacBio HiFi data types
Organization: pacificbiosciences
pacbio,Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Organization: pacificbiosciences
pacbio,Minor Variant Calling and Phasing Tools
Organization: pacificbiosciences
pacbio,A phase-aware pharmacogenomic diplotyper for PacBio datasets
Organization: pacificbiosciences
pacbio,Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Organization: parklab
pacbio,NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
User: philres
pacbio,Ultra-fast de novo assembler using long noisy reads
User: ruanjue
pacbio,Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
User: serka-m
pacbio,Lightweight bioinformatics pipeline for microbial genome recovery
User: serka-m
pacbio,STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
User: unique379r
pacbio,A fast tool for hybrid genome assembly of long and short reads
Organization: vpc-ccg
pacbio,Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
Organization: vpc-ccg
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