Topic: somatic-mutations Goto Github
Some thing interesting about somatic-mutations
Some thing interesting about somatic-mutations
somatic-mutations,Transposable Element Finder - Detection of active transposable elements from NGS data
User: akiomiyao
somatic-mutations,Transposon Insertion Finder - Detection of new TE insertions in NGS data
User: akiomiyao
somatic-mutations,Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
User: caravagn
somatic-mutations,Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
Organization: caravagnalab
Home Page: https://caravagnalab.github.io/lineaGT/
somatic-mutations,R Shiny based lightweight mutation exploration tool
User: cbrueffer
somatic-mutations,Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
Organization: clinical-genomics
Home Page: https://balsamic.readthedocs.io/
somatic-mutations,DNA sequencing analysis notes from Ming Tang
User: crazyhottommy
somatic-mutations,Geno-DeBasher package for detection of germline and somatic variants
User: daormar
Home Page: https://daormar.github.io/geno-debasher/
somatic-mutations,An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
User: fungest
somatic-mutations,DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Organization: getzlab
somatic-mutations,This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
Organization: ghga-de
somatic-mutations,a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
Organization: ghga-de
somatic-mutations,DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Organization: google
somatic-mutations,
User: gvisona
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User: haoziyeung
somatic-mutations,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
somatic-mutations,ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Organization: hku-bal
somatic-mutations,Multi-sample somatic variant caller
Organization: iarcbioinfo
somatic-mutations,Detects hotspot regions for somatic mutations in 3D protein structures
Organization: karchinlab
somatic-mutations,An R package for mutation quality control of cancer genomic sequening dataset
User: likelet
Home Page: https://seqworld.com/CaMutQC/
somatic-mutations,Galaxy Tool Shed repositories maintained and developed by the Morin Lab.
Organization: morinlab
somatic-mutations,Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
User: nickveltmaat
somatic-mutations,Explore and filter structural variant calls from Lumpy and Delly VCF files
User: nriddiford
somatic-mutations,Microassembly based somatic variant caller for NGS data
Organization: nygenome
somatic-mutations,This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.
User: pllittle
somatic-mutations,This repo contains an R package to execute ROKET's real data analysis workflow on TCGA cancer types
User: pllittle
somatic-mutations,Tumor-only variant calling
User: pllittle
somatic-mutations,knowledge-based genotyping of cancer hotspots from the tumor BAM files
User: poisonalien
somatic-mutations,Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
User: sebastian-gregoricchio
somatic-mutations,π² An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
User: shixiangwang
Home Page: https://shixiangwang.github.io/sigminer/
somatic-mutations,Clone identification from single-cell data
Organization: single-cell-genetics
somatic-mutations,Personalized reference editor for somatic mutation discovery
Organization: thelonglab
somatic-mutations,Depository for Bioinformatics Master Project HT2022-VT2023
User: theorangebraincell
somatic-mutations,nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
User: tobiasrausch
somatic-mutations,:package: An R package for inferring the mutational exposures difference between groups.
Organization: uscbiostats
Home Page: https://bioconductor.org/packages/devel/bioc/html/HiLDA.html
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