Topic: indels Goto Github
Some thing interesting about indels
Some thing interesting about indels
indels,This repository includes the scripts used for analysis investigating the dynamics of indels in mammalian orthologous proteins and the examination of the ancestral reconstruction of multiple-character indels under the PIP.
Organization: acg-team
indels,xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from next-generation DNA sequencing data.
User: adigorla
indels,gappy extracts splids (split-inducing indels) from multiple sequence alignments.
User: alexdonath
indels,gappy2 is the successor of gappy v1
User: alexdonath
indels,An adaptable method for analyzing SNVs, INDELs, and CNVs from Whole Exome Sequencing (WES) data, emphasizing germline variants.
User: anbianchi
Home Page: https://github.com/anbianchi/IntegratedSNVINDELSandCNV
indels,Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
User: aquaskyline
indels,NGS data analysis scripts for HBV elimination research group
User: babinyurii
indels,A Platypus-based variant calling pipeline for cancer data
User: baezortega
indels,A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Organization: bimsbbioinfo
indels,A method for variant graph genotyping based on exact alignment of k-mers
Organization: bioinformatics-centre
indels,Dockstore implementation of CGP core WGS analysis
Organization: cancerit
indels,Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
Organization: cerc-genomic-medicine
indels,A Platypus-based workflow for indel calling
Organization: dkfz-odcf
indels,Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Organization: gear-genomics
Home Page: https://www.gear-genomics.com/indigo/
indels,Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.
User: georgiesamaha
indels,An advanced genotyping pipeline by next-generation sequencing (NGS) technology
User: hanryi
Home Page: http://zeasystemsbio.hzau.edu.cn/tools/ibp/
indels,Barton and Zeng (2018) - Pipeline for testing anavar with simulated data.
User: henryjuho
Home Page: https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msy054/4960016
indels,Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.
User: henryjuho
Home Page: https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msy054/4960016
indels,Barton and Zeng (2019) - Pipeline for great tit indel analysis.
User: henryjuho
Home Page: https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz068/5423187
indels,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
indels,Structural variant and indel caller for mapped sequencing data
Organization: illumina
indels,The Platinum Genomes Truthset
Organization: illumina
Home Page: https://illumina.github.io/PlatinumGenomes
indels,A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
User: josephcrispell
indels,Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
User: laurentnoe
Home Page: https://bioinfo.univ-lille.fr/storm/
indels,Microassembly based somatic variant caller for NGS data
Organization: nygenome
indels,VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
User: rhettrautsaw
indels,A tool suite for a simple, streamlined and rapid evaluation of variant callsets
Organization: rki-mf1
Home Page: https://github.com/rki-mf1/cievad
indels,MitoMut is a tool to call mitochondrial deletions from next generation sequencing (NGS) data
User: shane-e945
indels,Generic human DNA variant annotation pipeline
User: sigven
indels,A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
User: swvanderlaan
Home Page: https://swvanderlaan.github.io/MetaGWASToolKit/
indels,A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Organization: sydney-informatics-hub
indels,Structural variation and indel detection by local assembly
User: walaj
indels,The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
User: yenon118
indels,The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.
User: yenon118
indels,Snakemake-based computational workflow for neoantigen prediction from diverse sources
Organization: ylab-hi
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.