Topic: wgs Goto Github
Some thing interesting about wgs
Some thing interesting about wgs
wgs,Export save data from Microsoft Store/Game Pass version of the games
User: 13xforever
wgs,A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.
User: a-thind
wgs,Various scripts for efficient processing of 10k Salmonella genomes
User: apredeus
wgs,A simulator to genarate WSG data from refrence
User: cchd0001
wgs,Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
Organization: cerc-genomic-medicine
wgs,PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
Organization: corearray
wgs,A snakemake workflow for WGS-based tuberculosis transmission analysis
User: cvn001
wgs,A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Organization: daylily-informatics
Home Page: http://daylilyinformatics.com
wgs,As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
User: denniepatton
wgs,Genomic data manipulation tool
Organization: doublehelixapp
Home Page: https://doublehelix.app
wgs,Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
User: enormandeau
wgs,Whole Genome Sequencing analysis, WGS analysis
User: flowhub-team
wgs,WGSL based pixel shader format that can run on native and Web.
User: fralonra
wgs,De novo SNV analysis pipeline
User: freekmanders
wgs,Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
User: fuxialexander
wgs,A pipeline for detecting Somatic Insertion of DE novo RETROcopies
Organization: galantelab
Home Page: https://sideretro.readthedocs.io
wgs,A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
Organization: giovannellilab
Home Page: https://giovannellilab.github.io/Geomosaic/
wgs,Snakemake-based workflow for detecting structural variants in genomic data
Organization: googlingthecancergenome
Home Page: https://research-software.nl/software/sv-callers
wgs,Snakemake-based workflow for generating artificial genomes with structural variants
Organization: googlingthecancergenome
Home Page: https://research-software.nl/software/sv-gen
wgs,Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
User: gunzivan28
wgs,Analysis pipelines for genomic sequencing data
User: igordot
Home Page: https://igordot.github.io/sns
wgs,A Snakemake pipeline for Quality Control of Whole Genome Sequencing data
User: jackhump
wgs,DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
User: jfnavarro
wgs,Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
User: jhayer
wgs,Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling from single labs to multi-institution scale.
Organization: kccg
Home Page: https://seave.public.garvan.org.au/
wgs,Kourami: Graph-guided assembly for HLA alleles
Organization: kingsford-group
wgs,A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
User: laura-budurlean
wgs,Call and score variants from WGS/WES of rare disease patients.
Organization: nf-core
Home Page: https://nf-co.re/raredisease
wgs,Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
User: oschwengers
Home Page: https://doi.org/10.1099/mgen.0.000398
wgs,Rapid determination of appropriate reference genomes.
User: oschwengers
Home Page: https://doi.org/10.21105/joss.01994
wgs,Targeted Detection and Reconstruction of Plasmids
User: oschwengers
wgs,Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
User: sdhutchins
wgs,A web app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
User: senzhaocode
wgs,Long read structural variants in rare disease cohort
Organization: smail-lab-cmh
wgs,Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
User: songtaogui
wgs,
Organization: tnturnerlab
wgs,PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number variation within a given chromosomal range of a referenced bed file.
Organization: tnturnerlab
wgs,El genoma pequeño - analysis workflow for "the little genome"
User: tycheleturner
wgs,vSNP -- validate SNPs
Organization: usda-vs
wgs,vSNP -- validate SNPs
Organization: usda-vs
wgs,Generate Lorenz plots and Coverage plots directly from BAM files
User: yhoogstrate
wgs,A flexible, automation and pragmatic workflow tool to process the NGS data.
User: zhanghao-njmu
wgs,Data management of large-scale whole-genome sequence variant calls (Development version only)
User: zhengxwen
Home Page: http://www.bioconductor.org/packages/SeqArray
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