Topic: genetics Goto Github

👇 Here are 883 public repositories matching this topic...

apriha / lineage
genetics,tools for genetic genealogy and the analysis of consumer DNA test results
User: apriha
dna genes genetics genealogy snps chromosomes genotype bioinformatics ancestry

arnovanhilten / gennet
genetics,Framework for Interpretable Neural Networks
User: arnovanhilten
interpretable-neural-networks genetics neural-network deep-learning gennet genotype machine-learning neural-networks

benjamin-lee / codonadaptationindex
genetics,Python Implementation of Codon Adaption Index
User: benjamin-lee
Home Page: https://cai.readthedocs.io
bioinformatics codons genetics

biojulia / popgen.jl
genetics,Population Genetics in Julia
Organization: biojulia
Home Page: https://biojulia.github.io/PopGen.jl/
genetics genomics snps microsatellites fst structure popgen

broadinstitute / pyro-cov
genetics,Pyro models of SARS-CoV-2 variants
Organization: broadinstitute
sars-cov-2 genetics epidemiology

cmap / cmappy
genetics,Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Organization: cmap
Home Page: https://clue.io/cmapPy/index.html
gctx gct grp pandas gene genetics

cx0 / chatgpt-for-genetics
genetics,Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.
User: cx0
chatgpt chatgpt-api genetics open-targets graphql text-to-graphql openai openai-api

decodegenetics / graphtyper
genetics,Population-scale genotyping using pangenome graphs
Organization: decodegenetics
Home Page: http://dx.doi.org/10.1038/ng.3964
genotype variants graph genetics decode-genetics bioinformatics

gorpipe / gor
genetics,GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Organization: gorpipe
genetics genomics gwas bioinformatics python software gor gorpipe vcf spark

griffan / verifybamid
genetics,VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
User: griffan
Home Page: http://griffan.github.io/VerifyBamID/
genetics dna-sequences qc-analysis contamination bioinformatics biostatistics bam cram

gtonkinhill / fastbaps
genetics,A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
User: gtonkinhill
bayesian hierarchical-clustering genetics

hail-is / hail
genetics,Cloud-native genomic dataframes and batch computing
Organization: hail-is
Home Page: https://hail.is
genetics vcf genomics gwas bioinformatics python software hail

hardingnj / xpclr
genetics,Code to compute the XP-CLR statistic to infer natural selection
User: hardingnj
selection popgen genetics bioinformatics

harmslab / epistasis
genetics,A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
Organization: harmslab
Home Page: http://epistasis.readthedocs.io/
genotype-phenotype-maps python epistasis high-order nonlinear modeling genetics evolution

intermine / intermine
genetics,A powerful open source data warehouse system
Organization: intermine
Home Page: http://intermine.org
data-warehouse java tomcat genomics open-source opensource lgplv3 postgresql clojure clojurescript

j-andrews7 / genotify
genetics,A minimal desktop app for easy and convenient gene annotation and lookup.
User: j-andrews7
bioinformatics genetics gene-annotation desktop-application gene lookup protein-function

jiguangpeng / autopvs1
genetics,An automatic classification tool for PVS1 interpretation of null variants
User: jiguangpeng
Home Page: http://autopvs1.genetics.bgi.com
bioinformatics genetics medicine genetic-algorithm genetic-counseling

kalinnonchev / gnomad_db
genetics,This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
User: kalinnonchev
database genetics rare-variant-analysis gnomad annotation variant-analysis

labsquare / cutevariant
genetics,A standalone and free application to explore genetics variations from VCF file
Organization: labsquare
Home Page: https://cutevariant.labsquare.org/
genetics variant-call-format vcf gui pyside2 python3

lgmgeo / annotsv
genetics,Annotation and Ranking of Structural Variation
User: lgmgeo
genetics sv cnv annotation ranking priorization ngs

mareesat / gwa_tutorial
genetics,A comprehensive tutorial about GWAS and PRS
User: mareesat
bioinformatics genetics genomics gwas plink population-stratification population-structure prs qc r unix

markziemann / dee2
genetics,Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
User: markziemann
Home Page: http://dee2.io
bioinformatics data-mining genetics genomics rna-expression rna-seq transcriptomics

mentatpsi / osgenome
genetics,An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
User: mentatpsi
23andme snps genome data-crawling python genetic-data kendo flask genetics snpedia

michaelsebero / genetic-trait-detector
genetics,This python script detects known traits in raw human genetic data.
User: michaelsebero
23andme ancestrydna data detector disease dna gedmatch genetics snp tool

micutio / innit
genetics,A roguelike game where you play a micro organism inside a larger organism!
User: micutio
innit game game-engine genetics dna roguelike-game roguelike roguelikedev micro-organisms microbes

mklarqvist / tomahawk
genetics,Fast calculations of linkage-disequilibrium in large-scale human cohorts
User: mklarqvist
Home Page: https://mklarqvist.github.io/tomahawk/
bioinformatics genetics genomics linkage-disequilibrium population-genetics vectorization

mmkim1210 / geneticsmakie.jl
genetics,🧬High-performance genetics- and genomics-related data visualization using Makie.jl
User: mmkim1210
Home Page: https://mmkim1210.github.io/GeneticsMakie.jl/dev/
genetics genomics julia visualization makie bioinformatics cairomakie gwas phewas locuszoom

molgenis / molgenis
genetics,MOLGENIS - for scientific data: management, exploration, integration and analysis.
Organization: molgenis
Home Page: https://molgenis.org
molgenis java lifescience genetics bioinformatics biobank catalogue javascript freemarker

nasa / genelab_data_processing
genetics,
Organization: nasa
genetics pipeline genes genelab

odiogosilva / trifusion
genetics,Streamlining phylogenomic data gathering, processing and visualization
User: odiogosilva
Home Page: http://odiogosilva.github.io/TriFusion/
python phylogenetics phylogenomic genetics orthologues gui kivy visualization

opentargets / gentropy
genetics,Open Targets python framework for post-GWAS analysis
Organization: opentargets
Home Page: https://opentargets.github.io/gentropy/
drug-discovery genetics gwas open-source pyspark python

pgxcentre / genipe
genetics,Genome-wide imputation pipeline
Organization: pgxcentre
bioinformatics genetics genomics

phenopolis / phenopolis
genetics,An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
Organization: phenopolis
Home Page: https://www.phenopolis.org
phenotype genetics database server

plashchynski / awesome-genetics
genetics,A curated list of awesome personal genomics software, libraries, and educational resources.
User: plashchynski
genetics genomics 23andme ancestry geneology bioinformatics dna health snpedia consumer-dna-test

quantgen / bgdata
genetics,A Suite of Packages for Analysis of Big Genomic Data
Organization: quantgen
r r-pkg cran genetics genomics gwas

rcollins13 / humanidiogramlibrary
genetics,Resource of human chromosome schematics & images
User: rcollins13
genetics genomics genomics-visualization data-visualization resources

rivas-lab / covid19
genetics,As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Organization: rivas-lab
coronavirus covid-19 genetics abo-blood uk-biobank hla polygenic-risk-scores blood-group sars-cov-2

sgkit-dev / sgkit
genetics,Scalable genetics toolkit
Organization: sgkit-dev
Home Page: https://sgkit-dev.github.io/sgkit
genetics statistical-genetics gwas pydata statgen popgen

smehringer / sviper
genetics,Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
User: smehringer
genetics decode-genetics long-reads correction structural-variation seqan

statgen / locuszoom-standalone
genetics,Create regional association plots from GWAS or meta-analysis
Organization: statgen
Home Page: http://locuszoom.org/
genetics bioinformatics visualization

tbates / umx
genetics,Making Structural Equation Modeling (SEM) in R quick & powerful
User: tbates
Home Page: https://tbates.github.io/
statistics psychology r sem structural-equation-modeling behavior-genetics twin-models cran umx tutorials

theislab / cellrank
genetics,CellRank: dynamics from multi-view single-cell data
Organization: theislab
Home Page: https://cellrank.org
machine-learning single-cell-rna-seq bioinformatics rna-velocity markov-chains genetics data-science fuzzy-clustering-analyses manifold-learning single-cell-genomics

thekaplanlab / msabrowser
genetics,🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
Organization: thekaplanlab
Home Page: https://thekaplanlab.github.io
msabrowser msa-viewer sequence-alignment-visualization multiple-sequence-alignment protein-domains msa bioinformatics genetics sequence-alignment

thierrygosselin / radiator
genetics,RADseq Data Exploration, Manipulation and Visualization using R
User: thierrygosselin
Home Page: https://thierrygosselin.github.io/radiator/
radseq radseq-data imputation genotype-likelihoods filter genetics missingness outliers genomics genomic-data-analysis

trekhleb / self-parking-car-evolution
genetics,🧬 Training the car to do self-parking using a genetic algorithm
User: trekhleb
Home Page: https://trekhleb.dev/self-parking-car-evolution
threejs three-js cannonjs cannon-js evolutionary-algorithms evolutionary-algorithm genetic-algorithm self-driving-car genetics

tskit-dev / msprime
genetics,Simulate genealogical trees and genomic sequence data using population genetic models
Organization: tskit-dev
python coalescent trees tskit genetics genomics simulation msprime

twoxes / awesome-structural-bioinformatics
genetics,Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
User: twoxes
molecular-informatics chemistry machine-learning deep-learning cheminformatics biology quantum-chemistry docking protein alphafold

varfish-org / varfish-server
genetics,VarFish: comprehensive DNA variant analysis for diagnostics and research
Organization: varfish-org
vcf variant-filtration genetics varfish variant-prioritization

wilkox / gggenes
genetics,➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
User: wilkox
Home Page: http://wilkox.org/gggenes
genetics ggplot2 r

zhanxw / rvtests
genetics,Rare variant test software for next generation sequencing data
User: zhanxw
next-generation-sequencing ngs association-analysis gwas rare-variant meta-analysis genotype skat c-plus-plus variants