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chatgpt-for-genetics

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

chatgpt-retrieval-plugin

The ChatGPT Retrieval Plugin lets you easily search and find personal or work documents by asking questions in everyday language.

dream2022-noisy-chardonnay

DREAM2022 competition for predicting promoter expression from DNA sequence.

evals

Evals is a framework for evaluating OpenAI models and an open-source registry of benchmarks.

geneformer-finetune

gexpfoundation_hackathon

Code repository for our submission at BioxML hackathon, team LLM

icml-human-genetics

Data repository for ICML 2022 CompBio workshop paper.

lit-gpt

Hackable implementation of state-of-the-art open-source LLMs based on nanoGPT. Supports flash attention, 4-bit and 8-bit quantization, LoRA and LLaMA-Adapter fine-tuning, pre-training. Apache 2.0-licensed.

llm-for-clinical-variants

Data repository for NeurIPS 2022 LMRL workshop paper.

llm-typos

Impact of typos and common misspellings on LLM task performance.

mech-interpretability

Exploring length generalization in the context of indirect object identification (IOI) task for mechanistic interpretability.

ml-engineering

Machine Learning Engineering Guides and Tools

nejm-image-challenge

NEJM Image Challenge dataset and experiments

neurips-llm-efficiency

My submission for NeurIPS 2023 LLM Efficiency Challenge.

ntia-open-weights

Comments on the NTIA Open Weights RFC

observed-antibody-space

Query Observed Antibody Space (OAS) database for downstream language modeling tasks.

psychic-couscous

quant_gen

Useful functions for quantitative genetics analysis

touch-the-grass

Mood companion using location history and LLM-powered description of photos