griffan Goto Github PK

avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

awesome-nextflow

A curated list of nextflow based pipelines

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

celltypetracker

CellTypeTracker

cnblogs

一些我在平时工作和学习中积累的编程相关的资源。如果大家有兴趣可以一起增加，修改。

complete-striped-smith-waterman-library

cpp_parallelization_examples

The study & production material for https://www.youtube.com/watch?v=Pc8DfEyAxzg

cppcoreguidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

document.ai

基于向量数据库与GPT3.5的通用本地知识库方案(A universal local knowledge base solution based on vector database and GPT3.5)

dotfiles

Settings for various tools I use.

dragmap

DRAGEN open-source mapper

fastbook

The fastai book, published as Jupyter Notebooks

fastquick

Ultra Fast NGS Data QC Tool

fm-index

Educational implementation of BWT and FM-index

gatk4-germline-snps-indels

Workflow for germline short variant discovery using GATK4

gpt-crawler

Crawl a site to generate knowledge files to create your own custom GPT from a URL

gpt4all

gpt4all: a chatbot trained on a massive collection of clean assistant data including code, stories and dialogue

graph-genomics-review

Pangenome graphs (review article on graph-based pangenomic methods)

graph-genotyping-paper-pipelines

Collection of Snakefile Python scripts for the variant discovery and genotyping pipelines in cattle

griffan.github.io

My personal webpage

hg002_data_freeze_v1.0

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

ipython_notebook_goodies

Random goodies for use in iPython Notebooks

lift-over-vcf

UCSC liftOver (genome build converter) for vcf format

magnum-nlc2cmd

Magnum-NLC2CMD is the winning solution for the NeurIPS 2020 NLC2CMD challenge.

parahmm

Parallel Implementation of HMM on Multicore Platform

popscle

(NOTE: This is a development fork, please refer to official repo at statgen: https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools

privategpt

Interact with your documents using the power of GPT, 100% privately, no data leaks

prml

PRML algorithms implemented in Python

quivr

Dump all your files and thoughts into your GenerativeAI Second Brain and chat with it