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awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bedparse

Python module and CLI tool to perform operations on BED files

bioinformatics

Tools for bioinformatics

biopython

Official git repository for Biopython (converted from CVS)

bokeh

Interactive Web Plotting for Python

brady-vs-grey

Brady vs. Grey

branchpro

This is a one-week project in which we are using branching processes to estimate the time-dependent reproduction number of a disease.

circkit

High-performance circular sequence manipulation

codonadaptationindex

Python Implementation of Codon Adaption Index

congo

A simple, lightweight theme for Hugo built with Tailwind CSS.

contacts-app

A little Vue-based contacts app demo

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, jQuery plugin projects.

cookiecutter-pandoc-paper

A Cookiecutter for writing papers in Markdown via Pandoc

cs100-lab0

cs260r-final

cyphercat

Implementation of memebership inference and model inversion attacks, extracting training data information from an ML model. Benchmarking attacks and defenses.

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deep-rules

Ten Quick Tips for Deep Learning in Biology

dhall

A redirector for HUDS menus

dnavisualization.org

🧬📈 Turn DNA sequences into interactive visualizations

dotfiles

electrum

Electrum Bitcoin Wallet

filereader.js

A lightweight wrapper for the JavaScript FileReader interface

fire

🔥 Just a tiny tool for managing my money (and first learning Vue)

horcrux

Split your file into encrypted fragments so that you don't need to remember a passcode

hvrd.tk

Simple site to access Harvard University Library's EZproxy system

hypothesis

Hypothesis is a powerful, flexible, and easy to use library for property-based testing.

joss

The Journal of Open Source Software

kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

kraken2

The second version of the Kraken taxonomic sequence classification system