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bamhash

bamliftover

bamqc

Quality control for BAM files

bamshrink

Filter for BAM-files

chopbai

Chops a bam index file into pieces

covid19_reconstruction_iceland

gnonadd

graphtyper

Population-scale genotyping using pangenome graphs

graphtyper-pipelines

Recommended Graphtyper pipelines

lrcaller

lrs_sv_sets

VCF files of SVs using long-read sequencing (LRS).

mdnm_analysisanddata

Scripts for mDNM analysis and the data the analysis was run on.

nanopolish

Signal-level algorithms for MinION data

nanopolish_svsquigglefilter

Extension to nanopolish to compute alt-ref allele likelihood differences for suggested SVs using the squiggles of reads involved.

ncourd

Modelling Length Distributions of NCO Events and Gene Conversion Tracts

popstr

PopSTR - A Population based microsatellite genotyper

popvcf

Lossless VCF compression

proteomics_comparison

Supplementary code for the article "Large-scale plasma proteomics comparisons through genetics and disease associations"

ratatosk

Hybrid error correction of long reads using colored de Bruijn graphs

read_haps

Detects human contamination in bam files

scrappie

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

seqanhts

A SeqAn 2.1 fork that can use htslib

squigglesv_samplerun

Sample run with test data on the squigglesv branch of Nanopolish

sv-merger

Forms SV cliques using the CAST (Cluster Affinity Search Technique) algorithm.

svimmer

Structural variant merging tool

sviper

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.