jackhump Goto Github PK
Name: Jack Humphrey
Type: User
Company: Mount Sinai School of Medicine
Bio: RNA, Genomics. member of @RajLabMSSM
Location: New York City
Name: Jack Humphrey
Type: User
Company: Mount Sinai School of Medicine
Bio: RNA, Genomics. member of @RajLabMSSM
Location: New York City
Data Portal for NYGC ALS Spinal Cord
Visualising LeafCutter sQTLs found in the CommonMind Consortium (CMC) brain dataset
Scripts used to discover and quantify non-annotated cryptic splicing in RNA-seq data
A set of snakemake pipelines for doing RNA editing
An R package for creating sophisticated plots of genomic intersections.
assessing spliceosome fidelity from RNA-seq junction reads
Forked RNA-Seq data processing for the Cryptic Exon project
"All code written for Transcriptomic analysis of frontotemporal lobar degeneration with TDP-43 pathology reveals cellular alterations across multiple brain regions"
Scripts written for the FUS NLS mutation comparison with FUS KO project
Create anatograms using ggplot2
All code written for hnRNPK manuscript
Personal website
a set of scripts for stupid things I have to do regularly. Mostly just a wrapper for BedTools.
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Just the leafviz parts of Leafcutter
Stuff I worked on for a Web Development course in June 2017
where I keep my long genes scripts
Important lab information for new starters!
Work for the UCL Institute of Opthalmology
A minimap2 frontend for PacBio native data formats
My thesis - due for submission in November 2018
Functional Genomics on the PSP GWAS
A repo to contain various RNA-seq processing pipelines, to cut down how many different repos I have.
Visualising LeafCutter sQTLs found in the ROSMAP brain dataset
visualising LeafCutter sQTLs
functions for sQTL visualisation
Work in the Pritchard Lab at Stanford, CA
scripts written for Fratta et al "Endogenous TDP-43 mutant mice have novel gain of splicing function and ALS characteristics in vivo"
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.