Topic: atac-seq Goto Github
Some thing interesting about atac-seq
Some thing interesting about atac-seq
atac-seq,A toolkit for NGS analysis with Python
User: afrendeiro
Home Page: http://ngs-toolkit.readthedocs.io
atac-seq,Cell type specific enrichments using finemapped variants and quantitative epigenetic data
User: caleblareau
Home Page: https://caleblareau.github.io/gchromVAR/
atac-seq,Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Organization: costalab
Home Page: https://reg-gen.readthedocs.io/
atac-seq,ATAC-seq snakemake pipeline
User: crazyhottommy
atac-seq,CWL based Bioinformatics Workflows
Organization: datirium
atac-seq,Code for scKINETICS (ISMB 2023)
Organization: dpeerlab
atac-seq,Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
Organization: epigen
Home Page: https://epigen.github.io/atacseq_pipeline/
atac-seq,A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
Organization: epigen
Home Page: https://epigen.github.io/dea_limma/
atac-seq,A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Organization: epigen
Home Page: https://epigen.github.io/enrichment_analysis/
atac-seq,A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Organization: epigen
Home Page: https://epigen.github.io/genome_tracks/
atac-seq,Pipelines for NGS data preprocessing by the Bock lab and friends
Organization: epigen
atac-seq,chromatin Variability Across Regions (of the genome!)
Organization: greenleaflab
Home Page: https://greenleaflab.github.io/chromVAR/
atac-seq,nucleosome calling using ATAC-seq
Organization: greenleaflab
atac-seq,deepStats: a stastitical toolbox for deeptools and genomic signals
User: gtrichard
atac-seq,AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
User: itsvenu
Home Page: https://bioconductor.org/packages/ALPS
atac-seq,R package IReNA
User: jiang-junyao
atac-seq,Extract Sequence from Genome According to Annotation File
User: junjunlab
Home Page: https://github.com/junjunlab/BioSeqUtils
atac-seq,A small R package to make sequencing read coverage plots in R.
User: kauralasoo
atac-seq,ATAC-seq and DNase-seq processing pipeline
Organization: kundajelab
atac-seq,HMMRATAC peak caller for ATAC-seq data
Organization: liulabub
atac-seq,Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
Organization: loosolab
atac-seq,MACS -- Model-based Analysis of ChIP-Seq
Organization: macs3-project
Home Page: https://macs3-project.github.io/MACS/
atac-seq,Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
Organization: manchesterbioinference
atac-seq,Customizable workflows based on snakemake and python for the analysis of NGS data
Organization: maxplanck-ie
Home Page: http://snakepipes.readthedocs.io
atac-seq,Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Organization: miraldilab
atac-seq,An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
Organization: ncbi-hackathons
atac-seq,ATAC-seq peak-calling and QC analysis pipeline
Organization: nf-core
Home Page: https://nf-co.re/atacseq
atac-seq,Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Organization: nf-core
Home Page: https://nf-co.re/differentialabundance
atac-seq,The ChIP-Seq peak calling algorithm using convolution neural networks
User: odb9402
atac-seq,A toolkit for working with ATAC-seq data.
Organization: parkerlab
atac-seq,A toolkit for QC and visualization of ATAC-seq results.
Organization: parkerlab
atac-seq,Benchmarking computational single cell ATAC-seq methods
Organization: pinellolab
atac-seq,Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
User: seandavi
atac-seq,Coupled clustering of single cell genomic data
Organization: suwonglab
atac-seq,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Organization: suwonglab
atac-seq, Analysing Capture Seq Count Data
Organization: teammaclean
atac-seq,A Python package for fast operations on 1-dimensional genomic signal tracks
Organization: thejacksonlaboratory
atac-seq,Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
User: tobiasrausch
Home Page: https://tobiasrausch.com/courses/atac/
atac-seq,Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Organization: vanheeringen-lab
Home Page: https://vanheeringen-lab.github.io/seq2science
atac-seq,A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
User: wbaopaul
atac-seq,Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
User: wzthu
Home Page: https://www.bioconductor.org/packages/release/bioc/html/esATAC.html
atac-seq,:dart: ChIP peak Annotation, Comparison and Visualization
Organization: yulab-smu
Home Page: https://onlinelibrary.wiley.com/share/author/GYJGUBYCTRMYJFN2JFZZ?target=10.1002/cpz1.585
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.