Topic: cwl Goto Github
Some thing interesting about cwl
Some thing interesting about cwl
cwl, Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Organization: 4dn-dcic
cwl,Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
Organization: aclimatise
Home Page: https://aclimatise.github.io/CliHelpParser/
cwl,Python package to extend Airflow functionality with CWL1.1 support
Organization: barski-lab
Home Page: https://barski-lab.github.io/cwl-airflow
cwl,Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Organization: cbica
Home Page: https://www.cbica.upenn.edu/captk
cwl,IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Organization: common-workflow-lab
Home Page: https://ipython2cwl.readthedocs.io/
cwl,A translator from WDL to CWL v1.2
Organization: common-workflow-lab
cwl,[Experimental] Workflow Definition Language (WDL) to CWL
Organization: common-workflow-lab
Home Page: https://github.com/common-workflow-lab/wdl-cwl-translator
cwl,Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Organization: common-workflow-language
Home Page: https://www.commonwl.org
cwl,Python utilities for CWL
Organization: common-workflow-language
Home Page: https://cwl-utils.readthedocs.io/
cwl,Profile for provenance research object of a CWL workflow run
Organization: common-workflow-language
Home Page: https://w3id.org/cwl/prov/
cwl,Framework for testing CWL tools and workflows
Organization: common-workflow-language
cwl,Common Workflow Language reference implementation
Organization: common-workflow-language
Home Page: https://cwltool.readthedocs.io/
cwl,A web application to view and share Common Workflow Language workflows
Organization: common-workflow-language
Home Page: https://view.commonwl.org/
cwl,The CWL v1.0 - v1.2 user guide
Organization: common-workflow-language
Home Page: http://www.commonwl.org/user_guide/
cwl,CWL CommandLineTool descriptions for biology/life-sciences related applications
Organization: common-workflow-library
Home Page: https://github.com/common-workflow-library/bio-cwl-tools#readme
cwl,Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
Organization: consonance
cwl,Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
Organization: crim-ca
Home Page: https://pavics-weaver.readthedocs.io
cwl,A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Organization: databiosphere
Home Page: http://toil.ucsc-cgl.org/.
cwl,CWL based Bioinformatics Workflows
Organization: datirium
cwl,Our VM/Docker sharing infrastructure and management component
Organization: dockstore
Home Page: https://dockstore.org/
cwl,Website user interface for Dockstore in Angular2
Organization: dockstore
Home Page: https://dockstore.org
cwl,CWL on Kubernetes
Organization: duke-gcb
Home Page: https://duke-gcb.github.io/calrissian/
cwl,VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Organization: ebi-metagenomics
cwl,This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Organization: ebi-metagenomics
Home Page: https://www.ebi.ac.uk/metagenomics/
cwl,CWL for GDC DNASeq workflows
Organization: nci-gdc
cwl,NLP pipeline software using common workflow language
Organization: nlppln
Home Page: http://nlppln.readthedocs.io/en/latest/
cwl,cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Organization: ohsu-comp-bio
cwl,CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
User: otiai10
Home Page: https://godoc.org/github.com/otiai10/cwl.go
cwl,Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
User: otiai10
Home Page: https://hotsub.github.io/
cwl,Yet Another CWL Engine by Golang
User: otiai10
cwl,[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Organization: pmcc-bioinformaticscore
Home Page: https://janis.readthedocs.io/
cwl,A language server for Common Workflow Language
Organization: rabix
cwl,Visual and code editor for Common Workflow Language
Organization: rabix
Home Page: http://rabix.io/
cwl,A library for generating an interactive SVG visualization of CWL workflows
Organization: rabix
cwl,Typescript data model for Common Workflow Language
Organization: rabix
cwl,REANA: Reusable research data analysis platform
Organization: reanahub
Home Page: https://docs.reana.io
cwl,Python library for RO-Crate
Organization: researchobject
Home Page: https://pypi.org/project/rocrate/
cwl,Seven Bridges Python library for programatic generation of CWL workflows.
Organization: sbg
cwl,Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Organization: stjudecloud
cwl,CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Organization: thejacksonlaboratory
cwl,A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
User: yyoshiaki
Home Page: https://github.com/yyoshiaki/VIRTUS/wiki
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