Dr. Barski Laboratory's Projects
Projects allele specific alignments to reference genome
BioWardrobe ATDP
BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Advanced analysis from BioWardrobe
BioWardrobe's backend rewritten for Apache Airflow.
Plugins for BioWardrobe Analysis
BioWardrobe basic and advanced analysis
BioWardrobe-NG
transition frontend ui for biowardrobe
Python package to extend Airflow functionality with CWL1.1 support
Python package to add and check the status of the submitted to Airflow jobs
Workflow for GA4GH/DREAM challenge (phase 2)
INPUT: sam, bam, gff, gtf, tab-delimited table annotations
Get certificate from https://letsencrypt.org/
BioWardrobe Iaintersect.
Apache Airflow (Incubating)
Utility to sort refGene tab-delimited annotation files from Genome Browser (DB dumps)
Fork from ROSE (https://bitbucket.org/young_computation/rose/src/master/annotation/)
Original SatScript.py from default R scripts (BioWardrobe)
CWL toolkit for single-cell sequencing data analysis
Set of utilities for interactive data visualization
Community maintained workflows & tools (with examples)
CWL based Bioinformatics Workflows