Topic: gene-regulatory-network Goto Github
Some thing interesting about gene-regulatory-network
Some thing interesting about gene-regulatory-network
gene-regulatory-network,pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Organization: aertslab
Home Page: http://scenic.aertslab.org
gene-regulatory-network,Fast visualization tool for large-scale and high dimensional single-cell data
Organization: aertslab
gene-regulatory-network,Motif analysis in gene regulatory networks
User: almeidasilvaf
Home Page: https://almeidasilvaf.github.io/magrene/
gene-regulatory-network,This repository contains the source code for the R Shiny server application allowing to query the gene regulatory network presented in https://www.nature.com/articles/s41467-023-38183-4
User: arendma
Home Page: http://grn-web.bio.uni-potsdam.de/
gene-regulatory-network,Modelling the double toggle switch pattern in gene regulatory networks and assessing its ability to implement memory
User: avelguenin
Home Page: https://avelguenin.github.io/GRN-doubleswitch/
gene-regulatory-network,My master's thesis project
User: azuur
gene-regulatory-network, R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Organization: cailab-tamu
gene-regulatory-network,Awesome GRN enhanced AnnData toolkit
Organization: cantinilab
Home Page: https://cantinilab.github.io/GRnnData/
gene-regulatory-network,Implementation of components from "The Evolution of Phenotypic Correlations and Developmental Memory" - Watson et al. (https://onlinelibrary.wiley.com/doi/full/10.1111/evo.12337)
User: chazarnik
gene-regulatory-network,Network-Oriented Repurposing of Drugs Python Package
User: clreda
Home Page: https://clreda.github.io/NORDic
gene-regulatory-network,Condition-Specific Gene Regulatory Network construction
User: dabinjeong
gene-regulatory-network, Inferring patient-specific regulatory alterations
Organization: daisybio
gene-regulatory-network,Code for scKINETICS (ISMB 2023)
Organization: dpeerlab
gene-regulatory-network,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
User: durenzn
gene-regulatory-network,Evaluation framework for computationally inferred gene networks from single-cell data.
Organization: engreitzlab
gene-regulatory-network,A Metropolis-Hastings algorithm for inferring edge probabilities in a Bayesian network
User: evanamartin
gene-regulatory-network,Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.
Organization: genome3d
gene-regulatory-network,Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Organization: genome3d
gene-regulatory-network,Re-implementation of Hidden Markov induced Dynamic Bayesian Network for inferring Gene Regulatory Networks from Drosophila time-series microarray data
User: hilariesit
gene-regulatory-network,Gold standard gene regulatory network data from the DREAM5 challenge.
User: jbris
gene-regulatory-network,A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
User: jbris
Home Page: https://jbris.github.io/nextflow-graph-machine-learning/
gene-regulatory-network,A deep model infers gene regulation networks from scRNA-seq data.
User: jchander
gene-regulatory-network,A Python package to generate spatially resolved gene regulatory networks from spatial transcriptomics data.
User: ladislav-hovan
gene-regulatory-network,A platform for the interactive assessment of gene regulatory networks
Organization: lcrawlab
Home Page: https://multioviz.ccv.brown.edu/
gene-regulatory-network,Matlab code for Bayesian Network Component Analysis
User: liebermeister
gene-regulatory-network,Causal inference, differential expression, and co-expression for scRNA-seq
User: lingfeiwang
gene-regulatory-network,Code used for simulations & analysis in Chevalier, GΓ³mez-Schiavon et al. (2019; Cell Systems)
User: mgschiavon
gene-regulatory-network,Multi-level Graph Autoencoder (GAE) to clarify cell cell interactions and gene regulatory network inference from spatially resolved transcriptomics
User: mihirbafna
Home Page: https://academic.oup.com/bioinformatics/article/39/Supplement_1/i484/7210503
gene-regulatory-network,This repository contains a Script for WGCNA based on the Tutorial of WGCNA page
User: natmurad
gene-regulatory-network,A novel GRN inference framework named GRINCD
User: nawtun
gene-regulatory-network,GREMA: Modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem
Organization: nctuiclab
Home Page: https://nctuiclab.github.io/GREMA
gene-regulatory-network,Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
Organization: netzoo
Home Page: https://netbooks.networkmedicine.org
gene-regulatory-network,netZooC is a network biology package implemented in C.
Organization: netzoo
Home Page: https://netzoo.github.io/
gene-regulatory-network,netZooM is a network biology package implemented in MATLAB.
Organization: netzoo
Home Page: https://netzoo.github.io/
gene-regulatory-network,netZooPy is a network biology package implemented in Python.
Organization: netzoo
Home Page: https://netzoo.github.io/
gene-regulatory-network,netZooR is a network biology package implemented in R.
Organization: netzoo
Home Page: https://netzoo.github.io/
gene-regulatory-network,Context specific and dynamic gene regulatory network reconstruction and analysis
Organization: pinellolab
gene-regulatory-network,Benchmarks of the gpuZoo implementations.
Organization: quackenbushlab
gene-regulatory-network,GRAND database of gene regulatory networks.
Organization: quackenbushlab
Home Page: https://grand.networkmedicine.org/
gene-regulatory-network,STOCBIONET is a software for stochastic simulation of biochemical networks
User: rafaelstjf
gene-regulatory-network,Adversarial generation of gene expression data using Generative Adversarial Networks
User: rvinas
gene-regulatory-network,It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
User: shuzwang
gene-regulatory-network,PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Organization: suwonglab
gene-regulatory-network,Regression with Summary Statistics exploiting Network Topology.
Organization: suwonglab
Home Page: https://suwonglab.github.io/rss-net/
gene-regulatory-network,R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
User: th789
gene-regulatory-network,This is the source code of experiment of the Research On Gene Regulatory Relationships Mining Based On Three-Phase Dependency Analysis Algorithm, here is the description about project structure. All files and folders are in the same directory,
User: tianzonglin
gene-regulatory-network,The second experiment of three-phrase-dependency-analysis method, only consider the single factor.
User: tianzonglin
gene-regulatory-network,Diffusion model for gene regulatory network inference.
Organization: tuftsbcb
Home Page: https://tuftsbcb.github.io/RegDiffusion/
gene-regulatory-network,A scalable method to infer fate specific gene regulatory network from single cell gene expression data
User: wwxkenmo
gene-regulatory-network,R and MATLAB scripts for MAGICAL
User: xichensf
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