Topic: anndata Goto Github
Some thing interesting about anndata
Some thing interesting about anndata
anndata,A guide to using a Seurat object in conjunction with RNA Velocity
User: basilkhuder
anndata,MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
Organization: cai-lab-at-university-of-michigan
Home Page: https://micv.works/
anndata,Awesome GRN enhanced AnnData toolkit
Organization: cantinilab
Home Page: https://cantinilab.github.io/GRnnData/
anndata,Feature-rich Python implementation of the tximport package for gene count estimation.
Organization: complextissue
Home Page: https://pytximport.readthedocs.io
anndata,SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
User: fanglu0411
Home Page: https://sgs.bioinfotoolkits.net/home
anndata,MuData-compatible storage for bioconductor's MultiAssayExperiment
User: ilia-kats
Home Page: https://ilia-kats.github.io/MuData/
anndata,Bring your single-cell data to life
Organization: lilab-bcb
Home Page: https://cirrocumulus.readthedocs.io/
anndata,TeeSnee is an algorithm designed to take high-dimensional gene expression data and represent it in low-dimensional space.
User: m1ma0314
anndata,Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
Organization: metaspace2020
Home Page: https://metaspace2020.github.io/metaspace-converter/
anndata,Fetch and format data matrices from AnnData
User: mvinyard
Home Page: https://michael-vinyard.gitbook.io/anndataquery/
anndata,AnnData-compatible wrapper of Spotify's annoy library.
User: mvinyard
anndata,Cell approximate nearest neighbors (ANN)
User: mvinyard
anndata,Neighbor graphs for single-cell data (AnnData)
User: mvinyard
anndata,Plotting assistant and resources
User: mvinyard
Home Page: https://pypi.org/project/cellplots/
anndata,Create PyTorch Datasets from AnnData
User: mvinyard
Home Page: https://torch-adata.readthedocs.io/en/latest/index.html
anndata,Michael Vinyard's utilities
User: mvinyard
anndata,pseudobulking on an AnnData object
User: noamteyssier
anndata,Multimodal datasets, in MuData format
Organization: pmbio
Home Page: https://gtca.github.io/muon
anndata,.h5mu files interface for Seurat
Organization: pmbio
Home Page: https://pmbio.github.io/MuDataSeurat/
anndata,Annotated data.
Organization: scverse
Home Page: http://anndata.readthedocs.io
anndata,Multimodal Data (.h5mu) implementation for Python
Organization: scverse
Home Page: https://mudata.rtfd.io
anndata,muon is a multimodal omics Python framework
Organization: scverse
Home Page: https://muon.scverse.org/
anndata,Muon for Julia
Organization: scverse
Home Page: https://scverse.github.io/Muon.jl/dev
anndata,Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
Organization: scverse
Home Page: https://rapids-singlecell.readthedocs.io/
anndata,Single-cell analysis in Python. Scales to >1M cells.
Organization: scverse
Home Page: https://scanpy.readthedocs.io
anndata,Xarray powered Image analysis toolkit.
User: srivarra
Home Page: https://anatomize.readthedocs.io/en/latest/
anndata,
Organization: theislab
Home Page: https://geome.readthedocs.io/en/latest/
anndata,anndata with trees
Organization: yoseflab
Home Page: https://treedata.readthedocs.io
anndata,An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
User: zhanghao-njmu
Home Page: https://zhanghao-njmu.github.io/SCP/
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