Topic: scatac-seq Goto Github
Some thing interesting about scatac-seq
Some thing interesting about scatac-seq
scatac-seq,Tools for working with scATAC-seq fragment files
Organization: aertslab
scatac-seq,Tools for correcting single cell barcodes for various scATAC-seq techniques.
Organization: aertslab
scatac-seq,Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
User: alexisvdb
Home Page: https://alexisvdb.github.io/singleCellHaystack/
scatac-seq,Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
Organization: alleninstitute
scatac-seq,scripts for manuscript 'benchmarking automated cell type annotation tools for single-cell ATAC-seq data'
User: aprilyuge
scatac-seq,CWL toolkit for single-cell sequencing data analysis
Organization: barski-lab
Home Page: https://barski-lab.github.io/sc-seq-analysis/
scatac-seq,Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
User: biobenkj
scatac-seq,A single-cell ATAC-seq simulation framework (R package)
Organization: bowang-lab
scatac-seq,Material for Advanced Sequencing Technologies pratical on scATAC-seq
User: caleblareau
Home Page: https://caleblareau.github.io/cshl-ast2019-scATAC/code/scATAC-tutorial.html
scatac-seq,Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
User: caleblareau
scatac-seq,single-cell ATAC Sequencing Analysis Pipeline
User: cfusterot
scatac-seq,Comparison of different classifiers used to model the accessibility of chromatin in mouse brain cells.
User: chris-anthony
scatac-seq,Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
Organization: csbg
scatac-seq,Accurate and fast cell marker gene identification with COSG
User: genecell
scatac-seq,A Julia package for single cell and spatial data analysis
User: haojiawu
scatac-seq,WDLized ArchR
User: hisplan
scatac-seq,This repository is for male breast cancer scRNA-seq and scATAC-seq data processing and figure generation.
User: hyunsoo77
scatac-seq,Scripts for analysis of transcriptomic data of the developing cornea
User: inesmarais
scatac-seq,BEER: Batch EffEct Remover for single-cell data
User: jumphone
scatac-seq,InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop
User: jumphone
scatac-seq,resVAE-ensemble: feature identification in single-cell data
User: lab-conrad
scatac-seq,Single-cell Transcriptome and Regulome Analysis Pipeline
User: liulab-dfci
scatac-seq,This repository contains a pipeline for analyzing data from scATAC-seq.
Organization: loosolab
scatac-seq,Documenation Chromatin Accessibility Atlas
User: lucauzh
scatac-seq,Source code for uncovering IBD risk-driving regulatory mechanisms within different immune cell types
User: mderakh3
scatac-seq,Parse ArchR arrow files to anndata h5ad
User: mvinyard
scatac-seq,Single-Cell Data Analysis Tools
User: mvinyard
scatac-seq,Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
User: parashardhapola
Home Page: http://scarf.readthedocs.io
scatac-seq,A python package for chromVAR
Organization: pinellolab
Home Page: https://pychromvar.readthedocs.io/
scatac-seq,STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Organization: pinellolab
Home Page: http://stream.pinellolab.org
scatac-seq,Programming in practice based on RNA-seq, scRNA-seq, ATAC-seq, scATAC-seq or ChIP-seq.
User: qinshangyao
scatac-seq,Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
User: raevskymichail
scatac-seq,scPerturb: A resource and a python/R tool for single-cell perturbation data
Organization: sanderlab
Home Page: http://www.sanderlab.org/scPerturb/
scatac-seq,SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
Organization: sankaranlab
scatac-seq,muon is a multimodal omics Python framework
Organization: scverse
Home Page: https://muon.scverse.org/
scatac-seq,A collection of tools to process single-cell omics datasets.
User: shiquan
scatac-seq,It contains the functional code to analyze P2 scRNA-seq and scATAC-seq data.
User: shuzwang
scatac-seq,R package for single-cell comparative regulatory analysis
Organization: suwonglab
scatac-seq,An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
Organization: swaruplabuci
scatac-seq,A crash course in scATAC-seq data processing
User: tacazares
scatac-seq,Paper list of single cell omics
User: tongzhou2017
scatac-seq,Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
User: wukevin
Home Page: https://www.pnas.org/content/118/15/e2023070118
scatac-seq,An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
User: zhanghao-njmu
Home Page: https://zhanghao-njmu.github.io/SCP/
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