Topic: multi-omics Goto Github
Some thing interesting about multi-omics
Some thing interesting about multi-omics
multi-omics,Time-Course Multi-Omics data integration
User: abodein
multi-omics,R package for COCA: Cluster-of-Clusters Analysis
User: acabassi
Home Page: https://acabassi.github.io/coca/articles/coca-vignette.html
multi-omics,R package for KLIC: Kernel Learning Integrative Clustering
User: acabassi
Home Page: https://acabassi.github.io/klic/articles/klic-vignette.html
multi-omics,TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
User: ashleymaeconard
multi-omics,BACNET is a Java based platform to develop website for multi-omics analysis
Organization: becavin-lab
multi-omics,Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
Organization: bimsbbioinfo
multi-omics,Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
Organization: biobakery
Home Page: http://huttenhower.sph.harvard.edu/melonnpan
multi-omics,Multi-Omics Factor Analysis
Organization: biofam
Home Page: https://biofam.github.io/MOFA2/
multi-omics,Depicting pseudotime-lagged causality for accurate gene-regulatory inference
User: calebclayreagor
multi-omics,Molecular interactions inference from single-cell multi-omics data
Organization: cantinilab
Home Page: https://cantinilab.github.io/HuMMuS/
multi-omics,Single-cell multi-omics integration using Optimal Transport
Organization: cantinilab
Home Page: https://mowgli.rtfd.io
multi-omics,The SUbgraph BAsed mulTI-OMIcs Clustering (SUBATOMIC) framework infers interpretable modules with a specific topology.
Organization: cbigr
multi-omics,R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
User: chenweng1991
Home Page: https://chenweng1991.github.io/redeemR/
multi-omics,Flexible omics pipeline
User: epruesse
Home Page: https://ymp.readthedocs.io
multi-omics,🧠Deep Learning-based✔️ Ovarian Cancer🙅🏻♀️ Subtypes Identification using Multi-Omics Data✅
User: garimasingh128
Home Page: https://biodatamining.biomedcentral.com/articles/10.1186/s13040-020-00222-x
multi-omics,Python toolbox for multi-omics data mapping and analysis
Organization: glasgowcompbio
multi-omics,Accompanying code for Image2Omics
Organization: gsk-ai
multi-omics,Omics data integration with o2plsda
User: guokai8
multi-omics,Integrated Machine Learning for Multi-omics Classification and Prediction
User: himelmallick
multi-omics,An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
Organization: huising-lab
multi-omics,MuData-compatible storage for bioconductor's MultiAssayExperiment
User: ilia-kats
Home Page: https://ilia-kats.github.io/MuData/
multi-omics,MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers
User: inukj
multi-omics,ODG: Omics Database Generator - Integration toolkit for -omics data
User: jguhlin
multi-omics,A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
User: jonnytran
Home Page: https://openomics.readthedocs.io/en/latest/
multi-omics,Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
User: krassowski
multi-omics,Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
User: krassowski
Home Page: https://doi.org/10.3389/fgene.2020.610798
multi-omics,MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedical applications.
User: laminetourelab
multi-omics,CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
Organization: maxsonbraunlab
Home Page: https://maxsonbraunlab.github.io/CITEViz/
multi-omics,Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
Organization: motrpac
Home Page: https://motrpac.github.io/MotrpacRatTraining6mo/
multi-omics,gNOMO2 allows integrated multi-omics analyses of microbiomes
User: muzafferarikan
multi-omics,Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Organization: nf-core
Home Page: https://nf-co.re/hicar
multi-omics,Tutorial on survival modeling with omics data
Organization: ocbe-uio
Home Page: https://ocbe-uio.github.io/survomics
multi-omics,OmicsSuite website for releasing new version.
Organization: omicssuite
Home Page: https://omicssuite.github.io/
multi-omics,Disease subnetwork detection with explainable Graph Neural Networks
User: pievos101
Home Page: https://academic.oup.com/bioinformatics/article/38/Supplement_2/ii120/6702000
multi-omics,Multimodal datasets, in MuData format
Organization: pmbio
Home Page: https://gtca.github.io/muon
multi-omics,.h5mu files interface for Seurat
Organization: pmbio
Home Page: https://pmbio.github.io/MuDataSeurat/
multi-omics,An open-source R package for the Tapestri platform for integrative single cell multiomics data analysis
User: rachelgriffard
multi-omics,MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
Organization: rasmussenlab
Home Page: https://move-dl.readthedocs.io/
multi-omics,Multimodal Data (.h5mu) implementation for Python
Organization: scverse
Home Page: https://mudata.rtfd.io
multi-omics,muon is a multimodal omics Python framework
Organization: scverse
Home Page: https://muon.scverse.org/
multi-omics,Tutorials for multimodal omics data analysis
Organization: scverse
Home Page: https://muon-tutorials.rtfd.io/
multi-omics,Muon for Julia
Organization: scverse
Home Page: https://scverse.github.io/Muon.jl/dev
multi-omics,R package for High dimensional data analysis and integration with O2PLS!
User: selbouhaddani
Home Page: https://doi.org/10.1186/s12859-018-2371-3
multi-omics,INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation datasets covering disjoint sets of samples
Organization: shamir-lab
multi-omics,MONET
Organization: shamir-lab
multi-omics,[EMBC 2022] Multi-agent Feature Selection for Integrative Multi-omics Analysis
User: sinatabakhi
Home Page: https://ieeexplore.ieee.org/document/9871758
multi-omics,Multi-omics Systems-Level Interactive Data Exploration (multiSLIDE)
User: soumitag
multi-omics,Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
User: wukevin
Home Page: https://www.pnas.org/content/118/15/e2023070118
multi-omics,Multi-task deep learning framework for multi-omics data analysis
User: zhangxiaoyu11
multi-omics,SCOTCH is a Single-Cell multi-modal integration method leveraging the Optimal Transport algorithm and a cell matCHing strategy
User: zjufanlab
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