Topic: gene-regulation Goto Github
Some thing interesting about gene-regulation
Some thing interesting about gene-regulation
gene-regulation,All code generated for Loupe et al. 2023
User: aanderson54
gene-regulation,All code generated from Rogers et al. 2023
User: aanderson54
gene-regulation,A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
Organization: aertslab
gene-regulation,The Drosophila melanogaster gap genes circuit simulator, coupled with Scatter Search optimization algorithm
User: amirmasoudabdol
gene-regulation,pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
User: asntech
Home Page: https://pyjaspar.rtfd.io
gene-regulation,Research compendium for the preprint "Hierarchical Regulation of Autophagy During Adipocyte Differentiation"
Organization: bcmslab
Home Page: https://doi.org/10.1101/2021.01.06.425505
gene-regulation,A โdata lightโ TF-network mapping algorithm using only gene expression and genome sequence data.
Organization: brentlab
gene-regulation,Depicting pseudotime-lagged causality for accurate gene-regulatory inference
User: calebclayreagor
gene-regulation,Detecting Regulatory Elements using GRO-seq and PRO-seq
Organization: danko-lab
gene-regulation,Association analysis of ADH and ALDH gene regulatory interactions with GWAS traits.
Organization: genome3d
gene-regulation,
Organization: genome3d
gene-regulation,Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.
Organization: genome3d
gene-regulation,De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.
Organization: genome3d
gene-regulation,Code for simulations and analysis used in Menon et al., 2024, "Proximal termination generates a transcriptional state that determines the rate of establishment of Polycomb silencing "
User: gm1613
gene-regulation,Gene Regulation Application Ontology
Organization: greekc
gene-regulation,ChIP-seq analysis pipeline encompassing data processing, quality control, alignment, peak calling, annotation and motif analysis.
User: jawa23bio
gene-regulation,Python visualization of single locus SMF data
User: jkmckenna
gene-regulation,Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
Organization: kundajelab
gene-regulation,Fast Inference of Networks from Directed Regulations
User: lingfeiwang
gene-regulation,target: An R Package to Predict Combined Function of Transcription Factors
User: mahshaaban
Home Page: https://bioconductor.org/packages/target/
gene-regulation,Meta-analysis of DNA methylation in ART
User: markziemann
gene-regulation,enabling pathway analysis of curated chip-seq data
User: markziemann
gene-regulation,A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
User: markziemann
Home Page: http://dee2.io/genesets.html
gene-regulation,An R package for multi-dimensional pathway enrichment analysis
User: markziemann
Home Page: https://bioconductor.org/packages/mitch
gene-regulation,An R package for multi-dimensional pathway enrichment analysis (legacy repo)
User: markziemann
gene-regulation,simulating dysregulated gene expression in single cell transcriptome data
User: markziemann
gene-regulation,Gene regulation exploring with OOP
User: omarcodex
Home Page: https://genomedrafts.wordpress.com
gene-regulation,A powerful abstraction of gene databases
Organization: omics-datascience
gene-regulation,Source code for miRiam web server and visualisation
User: prashnts
Home Page: https://miriam.noop.pw
gene-regulation,CREST-seq peak calling.
User: r3fang
gene-regulation,Crosstalk between codon optimality and 3' UTR cis-elements dictates mRNA stability
User: santiago1234
Home Page: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02251-5
gene-regulation,An integrative toolkit for detecting cell type-specific regulators
Organization: shao-lab
gene-regulation,Code for the research article "Exploring functional protein covariation across single cells using nPOP". It is distributed under MIT license.
Organization: slavovlab
Home Page: https://scp.slavovlab.net/nPOP
gene-regulation,Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
User: sunxqlab
gene-regulation,Analysis and retrieval of Regulatory EleMents (REMs) linked to genes
Organization: teamregio
Home Page: https://epiregio.de/
gene-regulation,R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
User: th789
gene-regulation,Code and data used by the JASPAR profile inference tool
Organization: wassermanlab
gene-regulation,Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
Organization: wassermanlab
gene-regulation,Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data
User: zhangjunpeng411
gene-regulation,Inferring ncRNA synergistic competition
User: zhangjunpeng411
gene-regulation,
User: zjufanlab
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