Topic: bioinformatics-tool Goto Github
Some thing interesting about bioinformatics-tool
Some thing interesting about bioinformatics-tool
bioinformatics-tool,CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
User: agmcfarland
bioinformatics-tool,kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
User: akcorut
Home Page: https://github.com/akcorut/kGWASflow/wiki
bioinformatics-tool,📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
User: avrabyt
Home Page: https://www.youtube.com/c/Avra_b
bioinformatics-tool,Linear-time de novo Long Read Assembler
Organization: bcgsc
bioinformatics-tool,:hibiscus: reference-free transcriptome assembly for short and long reads
Organization: bcgsc
bioinformatics-tool,⛓ Correct misassemblies using linked AND long reads
Organization: bcgsc
Home Page: https://bcgsc.github.io/tigmint/
bioinformatics-tool,The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
User: biologger
bioinformatics-tool,Phigaro is a scalable command-line tool for predicting phages and prophages
User: bobeobibo
bioinformatics-tool,Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
User: chgibb
Home Page: https://chgibb.github.io/PHATDocs
bioinformatics-tool,An implementation of MNN (Mutual Nearest Neighbors) correct in python.
User: chriscainx
bioinformatics-tool,Annotation helper tool for the manual curation of transposable element consensus sequences
User: clemgoub
Home Page: https://doi.org/10.1186/s13100-021-00259-7
bioinformatics-tool,PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
User: cliffren
bioinformatics-tool,Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
User: dermasugita
Home Page: https://viola-sv.readthedocs.io
bioinformatics-tool,MView extracts and reformats the results of a sequence database search or multiple alignment.
User: desmid
bioinformatics-tool,Explore biomolecular pathways in Reactome from the command-line or a Python script
User: dvklopfenstein
bioinformatics-tool,A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
Organization: ebi-jdispatcher
Home Page: https://www.ebi.ac.uk/jdispatcher/
bioinformatics-tool,TISIGNER: Unleash the power of synthetic biology
Organization: gardner-binflab
Home Page: https://tisigner.com
bioinformatics-tool,An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Organization: guobioinfolab
Home Page: http://bioinfo.life.hust.edu.cn/CATT/
bioinformatics-tool,RNA sequencing analysis software
User: guyteichman
Home Page: https://guyteichman.github.io/RNAlysis
bioinformatics-tool,Bioinformatics Library for Pharo
User: hernanmd
Home Page: http://biosmalltalk.github.io
bioinformatics-tool,Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Organization: imgag
bioinformatics-tool,A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Organization: inab
Home Page: http://trimal.cgenomics.org
bioinformatics-tool,Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
User: jamieheather
Home Page: https://jamieheather.github.io/stitchr/
bioinformatics-tool,Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Organization: jetbrains-research
bioinformatics-tool,FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
User: josiahseaman
bioinformatics-tool,A modular annotation tool for genomic variants
Organization: karchinlab
bioinformatics-tool,GWAS summary statistics files QC tool
User: kukuster
Home Page: https://doi.org/10.1186/s12859-022-04920-7
bioinformatics-tool,Fast and accurate prediction of coiled coil domains in protein sequences.
Organization: labstructbioinf
Home Page: https://toolkit.tuebingen.mpg.de/tools/deepcoil2
bioinformatics-tool,Python package to manage protein structures and their annotations
Organization: labstructbioinf
bioinformatics-tool,Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Organization: lightdock
Home Page: https://lightdock.org/
bioinformatics-tool,Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
User: mickaelleclercq
Home Page: http://www.compbio.ulaval.ca
bioinformatics-tool,memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
User: muellan
bioinformatics-tool,Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
User: n-szulc
bioinformatics-tool,an implementation of NSGA-II in java
User: onclave
bioinformatics-tool,Blender plugin to process biological data and molecular work.
User: pabloenmanuelramos
bioinformatics-tool,Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
User: raymondkiu
bioinformatics-tool,A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Organization: s4hts
Home Page: https://s4hts.github.io/HTStream/
bioinformatics-tool,Genomics data visualization in Python by using matplotlib.
User: shujiahuang
bioinformatics-tool,A python project for analysis of codon usage for gene or genome analysis
User: souradiptoc
Home Page: https://github.com/SouradiptoC/CodonU
bioinformatics-tool,counts k-mers, written in rust
User: suchapalaver
bioinformatics-tool,Scissor package
User: sunduanchen
bioinformatics-tool,iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
User: superzchen
bioinformatics-tool,iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
User: superzchen
bioinformatics-tool,iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
User: superzchen
bioinformatics-tool,⛰ covtobed | Convert the coverage track from a BAM file into a BED file
User: telatin
bioinformatics-tool,:rocket: seqfu - Sequece Fastx Utilities
User: telatin
Home Page: https://telatin.github.io/seqfu2
bioinformatics-tool,MethPhaser: methylation-based haplotype phasing of human genomes
Organization: treangenlab
Home Page: https://www.biorxiv.org/content/10.1101/2023.05.12.540573v1
bioinformatics-tool,:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
User: tseemann
bioinformatics-tool,A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Organization: urgi-anagen
Home Page: https://urgi.versailles.inra.fr/Tools/REPET
bioinformatics-tool,Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
User: yaqiangcao
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