Topic: long-read-sequencing Goto Github
Some thing interesting about long-read-sequencing
Some thing interesting about long-read-sequencing
long-read-sequencing,Kmer Analysis of Pileups for Genotyping
User: acenglish
long-read-sequencing,🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
User: akikuno
long-read-sequencing,a Python module to manipulate MIDS format.
User: akikuno
Home Page: https://akikuno.github.io/midsv/midsv/
long-read-sequencing,simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
User: astrabert
Home Page: https://astrabert.github.io/simON-reads/
long-read-sequencing,a deep neural network model for mapping modifications in nanopore Long-read sequencing data
User: baigal628
long-read-sequencing,Linear-time de novo Long Read Assembler
Organization: bcgsc
long-read-sequencing,A pipeline for high-quality bacterial genome construction using ONT sequencing
Organization: beatsonlab-microbialgenomics
long-read-sequencing,Rust library to support interacting with Oxford Nanopore POD5 files
User: bsaintjo
long-read-sequencing,Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Organization: clinical-genomics
long-read-sequencing,Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
Organization: collaborativebioinformatics
long-read-sequencing,Transcriptome long-read orientation with Deep Learning
Organization: comprna
long-read-sequencing,A short tandem repeat (STR) genotyping and analysis toolkit for long reads
User: davidlougheed
long-read-sequencing,MinION Open-source Nucleotide Identifier for Continuous Analysis - Software for MinION sequencing quantitative metagenomic analysis in real time
User: drquestion
Home Page: https://github.com/DrQuestion/monica
long-read-sequencing,MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
User: dyxstat
long-read-sequencing,Single cell Nanopore sequencing data for Genotype and Phenotype
Organization: gaolabtools
long-read-sequencing,DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Organization: google
long-read-sequencing,Clair3-RNA - a long-read small variant caller for RNA sequencing data
Organization: hku-bal
long-read-sequencing,ClairS - a deep-learning method for long-read somatic small variant calling
Organization: hku-bal
long-read-sequencing,ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Organization: hku-bal
long-read-sequencing,
Organization: hudsonalpha
long-read-sequencing,a fastx parser for generating sequence length metrics
Organization: hudsonalpha
long-read-sequencing,Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data
Organization: igdrion
long-read-sequencing,A snakemake pipeline to call structure variants from ONT data
Organization: jasonwong-lab
Home Page: https://github.com/jasonwong-lab/smk_sv
long-read-sequencing,Fast and space-efficient taxonomic classification of long reads
User: jensuweulrich
long-read-sequencing,Scripts used to compare SVs detected from long read and long read assembly
User: jiadong324
long-read-sequencing,Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
User: josiegleeson
long-read-sequencing,Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning
Organization: kaist-ina
long-read-sequencing,Graph-based assembly phasing
User: katerinakazantseva
long-read-sequencing,Long-read splice alignment with high accuracy
User: ksahlin
long-read-sequencing,NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
Organization: labshengli
Home Page: https://www.jax.org/research-and-faculty/faculty/sheng-li
long-read-sequencing,A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
User: lankycyril
Home Page: https://www.biorxiv.org/content/10.1101/2020.01.31.929307v1
long-read-sequencing,This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
User: lauraskak
long-read-sequencing,Coronavirus (SARS-Cov-2) sequencing analysis
User: magdoll
long-read-sequencing,Get L. pneumophila ST from long-read or hybrid assemblies.
User: marithetland
long-read-sequencing,Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
Organization: monarch-initiative
long-read-sequencing,A collection of publications on comparison of high-throughput sequencing technologies.
User: nazeeefa
long-read-sequencing,Assembly and binning of metagenomes
Organization: nf-core
Home Page: https://nf-co.re/mag
long-read-sequencing,Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
Organization: nf-core
Home Page: https://nf-co.re/scnanoseq/
long-read-sequencing,Assembly and intrahost/low-frequency variant calling for viral samples
Organization: nf-core
Home Page: https://nf-co.re/viralrecon
long-read-sequencing,scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
User: noush-joglekar
long-read-sequencing,A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Organization: quadram-institute-bioscience
long-read-sequencing,Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
User: serka-m
long-read-sequencing,Lightweight bioinformatics pipeline for microbial genome recovery
User: serka-m
long-read-sequencing, An algorithm for centromere assembly using long error-prone reads
User: seryrzu
long-read-sequencing,Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads
User: seryrzu
long-read-sequencing,A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
Organization: sheynkman-lab
long-read-sequencing,A long-read analysis toolbox for cancer and population genomics
User: tobiasrausch
long-read-sequencing,Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Organization: treangenlab
long-read-sequencing,🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
User: tseemann
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.