Topic: mlst Goto Github
Some thing interesting about mlst
Some thing interesting about mlst
mlst,GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
Organization: achtman-lab
Home Page: https://genome.cshlp.org/content/28/9/1395
mlst,Collection of scripts for bacterial genomics
User: aleimba
mlst,BSR-Based Allele Calling Algorithm
Organization: b-ummi
mlst,Enterobase scheme scraper. Download and list available schemes from Enterobase, and find their last modification date and time.
User: bajicv
mlst,Run mlst on multiple samples with integrated quality control.
Organization: bccdc-phl
mlst,cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Organization: bu-isciii
mlst,cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
Organization: cfsan-biostatistics
mlst,multi-locus sequence type clade classifier for Clostridioides difficile
User: eliottbo
mlst,Fast k-mer based tool for multi locus sequence typing (MLST)
Organization: jordanlab
mlst,stringMLST datasets
Organization: jordanlab
mlst,Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
User: kjolley
Home Page: https://pubmlst.org/software/bigsdb/
mlst,A companion application for analyzing and viewing BTyper output files in aggregate
User: lmc297
mlst,Rapid, in silico characterization of Bacillus cereus group isolates using WGS data
User: lmc297
mlst,In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
User: lmc297
mlst,In silico multi-locus sequence typing (MLST) for bacterial genomes
User: lmc297
mlst,Scripts used to generate the analyses and figures in the paper "Systems-based approach for optimization of a scalable bacterial ST mapping assembly-free algorithm".
User: npavlovikj
mlst,The MAB MLST Scheme for Mycobacterium absecssus
Organization: phac-nml
mlst,Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
Organization: public-health-bioinformatics
Home Page: http://www.irida.ca
mlst,List and download schemes from pubMLST.org and other BIGSDB servers
Organization: public-health-bioinformatics
mlst,A collection of bioinformatics tools for use with galaxy written at Quadram Institute
Organization: quadram-institute-bioscience
mlst,MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
Organization: segatalab
Home Page: http://segatalab.cibio.unitn.it/tools/metamlst/index.html
mlst,bacterial read typer :dna: :skateboard: :microbe:
User: tomdstanton
Home Page: https://github.com/tomdstanton/bart
mlst,mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
User: tripitakit
mlst,Pathogen whole genome sequence (WGS) data analysis pipeline
User: xiaoli-dong
mlst,all methods related to Enterobase
User: zheminzhou
Home Page: https://enterobase.warwick.ac.uk
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