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crisprscreen

To analyze whole genome Crispr screening data

cut-runtools-2.0

CUT&RUN and CUT&Tag data processing and analysis

epianeufinder

R package to detect breakpoints and assign somies to scATAC-seq data

ezsinglecell

ezsinglecell2

EZsinglecell2

giana

Ultrafast TCR clustering algorithm based on geometric isometry

ismart

Highly specific clustering of T cell receptor CDR3s

lineagetreebuilder

mecom_var

multipcrdesigner

myrenv

My Renv Base

redeem_reproducibility

Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

redeemr

R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

redeemv

repact

scavenge

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

snapatac

Single Nucleus Analysis Pipeline for ATAC-seq