Topic: gsea Goto Github
Some thing interesting about gsea
Some thing interesting about gsea
gsea,Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)
User: acastanza
gsea,Repository of R scripts for analysis of gene expression data
User: ahalfpen727
gsea,GSApp Pathway Analysis
User: albertme0308
Home Page: https://albert-montes.shinyapps.io/GSApp
gsea,Automated tool for single-cell cluster annotation running on the fGSEA framework
User: alex-trapp
gsea,Useful R functions
User: ameya225
gsea,The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
User: arashsm79
Home Page: https://www.nature.com/articles/s41598-023-39901-0
gsea,Gene Enrichment Identifier
User: aratahayashi
Home Page: https://yoavshaul-lab.shinyapps.io/gsea-geni/
gsea,Gene set enrichment network visualization
User: awakenedhaki
gsea,Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA
User: bntechie
gsea,Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Organization: broadinstitute
gsea,Thesis: Identifying significantly enriched gene sets with NMF-derived metagenes and their difference vectors
User: c-lonergan
gsea,An integrated genomic and immunogenomic web-based platform for gene set cancer research
User: chunjie-sam-liu
Home Page: http://bioinfo.life.hust.edu.cn/GSCA
gsea,Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
Organization: csbiology
Home Page: https://www.mdpi.com/1099-4300/22/9/1030
gsea,DBRetina python package
Organization: dbretina
Home Page: https://dbretina.github.io/DBRetina/
gsea,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
gsea,Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
Organization: gencorefacility
gsea,Gene Set Clustering based on Functional annotation
User: genescf
gsea,The official command-line program for gene-set-enrichment analysis (GSEA) 🏔️
Organization: gsea-msigdb
Home Page: https://gsea-msigdb.org
gsea,Function Enrichment analysis and Network construction
User: guokai8
Home Page: https://guokai8.github.io/richR/
gsea,Computational protemics analysis of cancer cell-lines at the level of single-cells
User: ibrahimelzahaby
gsea,MSigDB gene sets for multiple organisms in a tidy data format
User: igordot
Home Page: https://igordot.github.io/msigdbr
gsea,Lightweight Iterative Gene set Enrichment in R
User: jefworks
Home Page: https://CRAN.R-project.org/package=liger
gsea,Enrichment Networks for Pathway Enrichment Analysis
User: kerseviciute
gsea,Differential gene expression and gene enrichment analyses of B-cell line with ectopic expression of HIV-1 Tat protein
User: kirushka
gsea,Testing, development environment for a new project of KN BIBS
Organization: kn-bibs
gsea,Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
User: krassowski
gsea,Take command of your set enrichment analyses.
User: lianos
Home Page: https://lianos.github.io/sparrow/
gsea,Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
User: matteocereda
Home Page: http://www.ceredalab.com
gsea,Main projects during my current position in Petr Baranov Lab | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
User: mcrewcow
gsea,Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
User: mcrewcow
gsea,
User: mohammed-hassan3
gsea,Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
User: molecularpathologylab
Home Page: https://SubtypeExploreR.qub.ac.uk
gsea,R Markdown script to perform bioinformatic analysis of RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
User: moritzmadern
gsea,A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
User: nasqar
Home Page: http://nasqar.abudhabi.nyu.edu/ClusterProfShinyGSEA
gsea,Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Organization: nf-core
Home Page: https://nf-co.re/differentialabundance
gsea,GSEA plots in ggplot2
User: nicolash2
gsea,condense GSEA terms
User: nicolash2
gsea,Flexible gene set enrichment analysis
Organization: nki-ccb
gsea,Integrated Differential Expression and Annotation
User: noamteyssier
Home Page: https://idea-bio.readthedocs.io
gsea,GSEA plugin for PathVisio
Organization: pathvisio
Home Page: https://www.pathvisio.org/plugin/gene-set-enrichtment-analysis-plugin/
gsea,An All-Purpose Toolkit Facilitating Single-Cell Annotation with the CellMarker2.0 Database and Bulk RNA-Seq Analysis
User: person-c
Home Page: https://cying.org/easybio
gsea,Investigate the role of mtDNA in the sex determination/development of Potamilus streckersoni, a freshwater mussel with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
User: raqmejtru
gsea,Interpretation of RNAseq experiments through robust, efficient comparison to public databases
User: shbrief
Home Page: https://shbrief.github.io/GenomicSuperSignature/
gsea,Brings bulk and pseudobulk transcriptomics to the tidyverse
User: stemangiola
gsea, Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
Organization: xzhoulab
gsea,:bar_chart: A universal enrichment tool for interpreting omics data
Organization: yulab-smu
Home Page: https://yulab-smu.top/biomedical-knowledge-mining-book/
gsea,Gene Set Enrichment Analysis in Python
User: zqfang
Home Page: http://gseapy.rtfd.io/
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