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abacbs2020_tidytranscriptomics

adt_fat

Androgen deprivation therapy promotes an inflammatory and obesity-like microenvironment in periprostatic fat

armet

Algorithms for Resolving Microenvironment Transcriptomes

banksy

BANKSY: spatial clustering

bioc2021_tidytranscriptomics

bioc_2020_tidytranscriptomics

Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

biocasia2020

BiocAsia2020 repository

biocasia2020_tidytranscriptomics

biocblog

A Quarto blog for Bioconductor community

bioceurope2020_tidytranscriptomics

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

cellsig

cellxgenedp

R interface to the cellxgene data portal

collabora.clubsharing

Piattaforma di Design collaborative di clubSharing.it

cowplot

curatedatlasqueryr

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

dropletutils

Clone of the Bioconductor repository for the DropletUtils package.

fat-classification-rnaseq-2017

Reproducibility of the results for the article - Periprostatic tissue obtained from patients with from high-risk prostate cancer has a distinct transcriptional profile

ggmagnolia

glmmseq

Gene-level general linear mixed model

hpcell

Massively scalable R-native HPC-compatible pipeline for single-cell data analysis

lifecycle

Manage the life cycle of your exported functions and arguments

mangiola-lab-open-positions

This repository lists the current open positions in the Mangiola Laboratory

nanny

A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.

oligo_pbmc

overdispersed-gamma-reparametrisation

Study of how to match the negative binomial mean/overdispersion reparametrisation with gamma

pc-lymph-node-mets-evolution

plothistogram

ppcseq

Probabilistic outlier identification for bulk RNA sequencing data