Topic: antimicrobial-resistance Goto Github
Some thing interesting about antimicrobial-resistance
Some thing interesting about antimicrobial-resistance
antimicrobial-resistance,Antimicrobial resistance prediction app for KBase
User: aldro61
antimicrobial-resistance,Nextflow Wrapper for Mykrobe
Organization: bccdc-phl
antimicrobial-resistance,AMR/VF LGT focused bacterial genomics analysis workflow
Organization: beiko-lab
Home Page: https://beiko-lab.github.io/arete/
antimicrobial-resistance,Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
Organization: borgwardtlab
antimicrobial-resistance,A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
Organization: cidgoh
antimicrobial-resistance,Collection of planning documents, visualizations, and presentations for my dissertation research. "Investigating Multidrug Resistance in Escherichia coli with Phylogenetics and Machine Learning"
User: dachbrown
antimicrobial-resistance,Proof-of-concept for storing and querying harmonized AMR Genomic Analysis Results in datahike
User: dfornika
antimicrobial-resistance,👨💻🧬🤖 deep neural networks: 1Dconvolution experiments with kernel size and stride length
User: divprasad
antimicrobial-resistance,Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
User: jhayer
antimicrobial-resistance,Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
User: joelewis101
Home Page: https://joelewis101.github.io/blantyreESBL/
antimicrobial-resistance,PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
User: kiranjavkar
antimicrobial-resistance,MTB++ a software developed to predict antimicrobial resistance to 13 antibiotics and 3 families of antimicrobials.
User: m-serajian
antimicrobial-resistance,Software supporting M. Cavallaro, et al., Informing antimicrobial stewardship with explainable AI. PLOS Digit Health 2(1): e0000162 (2023) https://doi.org/10.1371/journal.pdig.0000162
User: mcavallaro
antimicrobial-resistance,Making whole bacterial genome sequencing data analysis easy
User: nmquijada
antimicrobial-resistance,
User: numpde
Home Page: https://counter-resistance.org
antimicrobial-resistance,A Jupyter notebook to demonstrate usage of piezo, gumpy and gnomonicus with different AMR catalogues
Organization: oxfordmmm
antimicrobial-resistance,Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
Organization: oxfordmmm
antimicrobial-resistance,Conditional Variational Auto-Encoder for generation of synthetic data for Antimicrobial Resistance.
User: palazzilorenzo
antimicrobial-resistance,Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
Organization: pha4ge
antimicrobial-resistance,Harmonization of AMR predictor tool outputs
Organization: pha4ge
antimicrobial-resistance,Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Organization: phac-nml
antimicrobial-resistance,
Organization: public-health-bioinformatics
antimicrobial-resistance,Detect the presence of specific resistance genes in a sample using the IRIDA system
Organization: public-health-bioinformatics
Home Page: http://www.irida.ca
antimicrobial-resistance,
Organization: public-health-bioinformatics
antimicrobial-resistance,Analysis and visualisation of antimicrobial resistance
User: rretkute
antimicrobial-resistance,HydrAMP: a deep generative model for antimicrobial peptide discovery
Organization: szczurek-lab
Home Page: https://hydramp.mimuw.edu.pl/
antimicrobial-resistance,AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.
User: vsmicrogenomics
antimicrobial-resistance,Scripts for ARIBA-based gene detection
User: wanyuac
antimicrobial-resistance,An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
User: wanyuac
antimicrobial-resistance,Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
User: wanyuac
antimicrobial-resistance,Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
User: wanyuac
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