mortazavilab Goto Github PK

5xfad_wgcna

Systematic Phenotyping and Characterization of the 5xFAD mouse model of Alzheimer’s Disease

cerberus

encode-references

A repository containing files and scripts requested by the ENCODE DCC for data submission

lapa

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

long-tuc-seq

long-TUC-seq pipeline

lrgasp-talon

mortazavilab.github.io

parse_pipeline

polyasite_workflow_gm12878

pywgcna

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

swan_paper

Repository for commands used for the Swan manuscript

swan_vis

A Python library to visualize and analyze long-read transcriptomes

talon

Technology agnostic long read analysis pipeline for transcriptomes

talon-paper-2020

References and analyses for updated TALON paper

topyfic

Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

transcriptclean

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

tuc-seq

TUC-seq pipeline