Topic: ncbi-taxonomy Goto Github
Some thing interesting about ncbi-taxonomy
Some thing interesting about ncbi-taxonomy
ncbi-taxonomy,Compare which reptile species are available in NCBI's Taxonomy Browser to those in the Reptile Database (RDB).
User: a-garg
ncbi-taxonomy,Julia package to handle the NCBI Taxonomy database.
User: banhbio
ncbi-taxonomy,Bio4j abstract model and general entry point to the project
Organization: bio4j
Home Page: http://www.bio4j.com
ncbi-taxonomy,Ribosomal RNA Allele Tree
User: crosenth
ncbi-taxonomy,Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
Organization: cvua-rrw
Home Page: https://cvua-rrw.github.io/taxidTools/
ncbi-taxonomy,API for accessing NCBI taxonomy
Organization: ensembl
ncbi-taxonomy,FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Organization: foi-bioinformatics
ncbi-taxonomy,Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
User: ggonnella
ncbi-taxonomy,Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
User: grelot
Home Page: https://gitlab.mbb.univ-montp2.fr/reservebenefit/worldmap_fish_genetic_diversity
ncbi-taxonomy,NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
User: gulshan-gaur
ncbi-taxonomy,:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
User: guyleonard
ncbi-taxonomy,:hatching_chick: locally query the ncbi taxonomy
User: hadrieng
Home Page: http://taxadb.readthedocs.io/
ncbi-taxonomy,Assign taxonomy with blast, can be used for qiime
User: joseph7e
ncbi-taxonomy,Taxonomy Update for LINNAEUS
Organization: julielab
ncbi-taxonomy,Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
User: louisvanlangendonck
ncbi-taxonomy,Download genomes from NCBI GenBank FTP site
User: michalbukowski
ncbi-taxonomy,Build for NCBITaxon
Organization: obophenotype
ncbi-taxonomy,Quick access to gene synonyms
User: oganm
Home Page: http://oganm.github.io/geneSynonym/
ncbi-taxonomy,:mouse: :left_right_arrow: :couple: An r package that works as a wrapper to homologene
User: oganm
Home Page: https://oganm.github.io/homologene/
ncbi-taxonomy,Annotate sequences by BLAST using NCBI taxonomy information
User: pcantalupo
ncbi-taxonomy,C++ tools for NCBI taxonomy tasks
User: pmenzel
ncbi-taxonomy,Wrapper around the NCBI taxonomy files
Organization: poisotlab
Home Page: https://poisotlab.github.io/NCBITaxonomy.jl/stable/
ncbi-taxonomy,create RDP classifier training files from NCBI taxonomy gbff file
User: rwst
ncbi-taxonomy,
Organization: science-of-lojban
Home Page: http://jbotcan.org/lojban/en/lojban-taxonomy.html
ncbi-taxonomy,LAMBDA – the Local Aligner for Massive Biological DatA
Organization: seqan
Home Page: https://github.com/seqan/lambda
ncbi-taxonomy,NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
User: shenwei356
ncbi-taxonomy,GPT (Decoder only Transformer - from scratch) generated fake/phoney taxonomies (based on NCBI taxonomy dataset)
User: suvash
ncbi-taxonomy,Taxallnomy is a balanced taxonomic tree database based on NCBI Taxonomy that provides taxonomic lineages according to the taxonomic ranks of Linnean classification system.
User: tetsufmbio
Home Page: http://biodados.icb.ufmg.br/taxallnomy
ncbi-taxonomy,TaxOnTree is a bioinformatic tool that automatically colors a phylogenetic tree according to the taxonomic information provided by NCBI taxonomy.
User: tetsufmbio
Home Page: http://bioinfo.icb.ufmg.br/taxontree
ncbi-taxonomy,muddy_db - mud volcano database
User: tracyrage
Home Page: https://muddy-db.shinyapps.io/muddy_db/
ncbi-taxonomy,muddy_mine - mining pipeline
User: tracyrage
Home Page: https://muddy-db.shinyapps.io/muddy_db/
ncbi-taxonomy,With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
User: tracywong117
ncbi-taxonomy,This Python script retrieve all children organism under an ancestor in NCBI taxonomy.
User: tracywong117
Home Page: https://huggingface.co/datasets/tracywong117/NCBI-Taxonomy
ncbi-taxonomy,🐞 Convert NCBI taxonomy dump into lineages
User: zyxue
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