Topic: taxonomy-assignment Goto Github
Some thing interesting about taxonomy-assignment
Some thing interesting about taxonomy-assignment
taxonomy-assignment,Tool to automatically extract keyphrases from text spanning across vast domains, and generate an ontology.
User: abhinand20
taxonomy-assignment,Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
Organization: appliedbinf
taxonomy-assignment,A Statamic (4.x and 5.x) addon
User: ebeauchamps
taxonomy-assignment,CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
User: flefler
taxonomy-assignment,An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
Organization: grice-lab
taxonomy-assignment,Taxonomy assignment with task queue
User: joonahn
taxonomy-assignment,Assign taxonomy with blast, can be used for qiime
User: joseph7e
taxonomy-assignment,Fetch taxonomic information from Entrez using a list of TaxIDs and visualize user-selected taxonomic ranks with SankeyMATIC.
User: justin-tpb
taxonomy-assignment,To identify taxa of given sequences via BOLD system (http://www.boldsystems.org/index.php)
User: linzhi2013
taxonomy-assignment,Find the best taxonomic assignement for the given genomic sequence based on maximum F-measure.
User: louisvanlangendonck
taxonomy-assignment,Python module that provide an alternative view of the outputs produced by the software pyani
User: lucatriboli
taxonomy-assignment,Former version of METAPIPE
User: marlaux
taxonomy-assignment,Next Generation Phylogenetic Microbiome Analysis Framework
User: mmtechslv
taxonomy-assignment,Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.
User: mmtechslv
taxonomy-assignment,Taxonomic classification of metagenomic contigs
Organization: nbisweden
taxonomy-assignment,nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Organization: nf-core
Home Page: https://nf-co.re/phyloplace
taxonomy-assignment,taxalogue - a toolkit to create comprehensive CO1 reference databases
User: nwnoll
taxonomy-assignment,metaTag: functional and taxonomical annotation of metagenomes through phylogenetic tree placement
User: robaina
Home Page: https://robaina.github.io/MetaTag/
taxonomy-assignment,#Scripts to create Kraken2 database of PAFTOL V2.0 Angio353 genes. An excellent database for taxonomic identification of plants. #https://treeoflife.kew.org/ #https://github.com/DerrickWood/kraken2/wiki #Prior to using this script, download and install kraken2 and make sure it is working and in your PATH. #Make sure the location of the python scripts used below are also in your PATH #Download PAFTOL V2.0 Angio353 genes from Kew #After building the DB, the scripts kraken2paired.py and top_taxa.py can be used to identify taxonomy of unknown samples. #e.g. #kraken2paired.py "reads/*.fastq" kraken_results/ 0 24 kraken2_paftol2/ #top_taxa.py "kraken_results/*" kraken.out
Organization: royal-botanic-gardens-victoria
taxonomy-assignment,Shiny app that matches scientific names to the EPICC taxonomy
Organization: smithsonian
Home Page: https://confluence.si.edu/display/DPOI
taxonomy-assignment,In this tutorial it is provided an overview of the anviβo workflow for the analysis of assembly-based shotgun metagenomic data.
User: trocialba
taxonomy-assignment,Checking the presence of a species in a metagenomics sample with known taxonomic composition
User: vini2
taxonomy-assignment,Application and Python module for average nucleotide identity analyses of microbes.
User: widdowquinn
Home Page: http://widdowquinn.github.io/pyani/
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