NBIS - National Bioinformatics Infrastructure Sweden's Projects
Åsa Johansson partner project 2020
Another Gtf/Gff Analysis Toolkit
The BILS Tools Portal engine
AIDA Data Hub Scrum team board
Ancient microbiome snakemake workflow
16S rRNA amplicon sequencing analysis workflow using QIIME2
This is a template for all assembly projects. Please read the instructions below on how to use it.
Snakemake workflow for evaluation of assemblies
ATLAS - Three commands to start analyzing your metagenome data
Compliance tester and test cases for Beacons.
Documentation for the Beacon API
Beacon v2 Reference Implementation (API)
Bigpicture project dataset landing page generator
Various scripts used to setup and interact with a Ceph cluster
NBIS peer review track project template
Various scripts used when migrating a Confluence Server instance to a Confluence Cloud instance.
Taxonomic classification of metagenomic contigs
How to manage materials for a course given by NBIS.
Common Workflow Language reference implementation
Cython talk held August 2019
Helm charts for deploying cytomine (https://doc.cytomine.org/) to a kubernetes environment.
Kubernetes software router for cytomine kubernetes deployments
Repository for Data Management training session modules
Documentation for data submissions from life science research in public repositories
Demo website for Bigpicture dataset description pages.
Analyzing gene flow in the deep biosphere via “multi-omics” integrated analysis
Development guidlines for software within NBIS.